View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16961_low_1 (Length: 488)
Name: NF16961_low_1
Description: NF16961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16961_low_1 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 488
Target Start/End: Complemental strand, 24420342 - 24419856
Alignment:
| Q |
1 |
tccatcacctcctccatatcatccctaccactacaactcacccccgcctcccatctattaagcttccggctattatttgtnnnnnnnntcaatgaattat |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24420342 |
tccatcacctcctccatatcatccctacctctacaactcacccccgcctcccatctattaagcttccggctattatttg-aaaaaatttcaatgaattat |
24420244 |
T |
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| Q |
101 |
attcagcattgttgtggttaatttgtattcaagcttttgttaataaaaaagtctatgctttacagtgaattaagagccttattttgattcaaatgcatct |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24420243 |
attcagcattgttgtggttaatttgtattcaatcttttgttaataaaaaagtctatgctttacagtgaattaagagccttattttgattcaaatgcatct |
24420144 |
T |
|
| Q |
201 |
gtgcatgcatggtgttaattcataagtttgtatttatttatctcctttagttgtttttnnnnnnntannnnnnnngttcgtttttaccttgttatcacga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||| ||||||| | |
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| T |
24420143 |
gtgcatgcatggtgttaattcataagtttgtatttatttttctcctttagttgtttttaagaaaatattttttttgttcgtttttaccttcttatcacta |
24420044 |
T |
|
| Q |
301 |
aaatgggctcaaaagaagataccaaataatgttatttgattatttgaatatagtgaatgcacaagataatatacattgatgaatacaaataaaaagaagt |
400 |
Q |
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|||| ||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| || ||| |
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| T |
24420043 |
aaatcggctcaaaattagataccaaataatattatttgattatttgaatctagtgaatgcacaagataatatacattgatgaatccaaataaatagcagt |
24419944 |
T |
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| Q |
401 |
atagaagaccaaatgtatagaccacaagaagtatgattaatgaatatttcaggcattaattcaacctacaaacgaaaatagtaccagt |
488 |
Q |
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| T |
24419943 |
atagcagaccaaatgaatagaccaccagtagtatgattaatgaaattttaaggaattaattaaacctacatacgacaattgtaccagt |
24419856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 164 - 470
Target Start/End: Original strand, 24471408 - 24471715
Alignment:
| Q |
164 |
agtgaattaagagccttattttgattcaaatgcatctgtgcatgcatggtgttaattcataagtttgtatttatttatctcctttagttgttttt----n |
259 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24471408 |
agtgaattaatagccttattttgattcaaatgcatctgtgcatgtatggtgttaattcataagtttgtgtttatttatctcctttagttgtttttaaaaa |
24471507 |
T |
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| Q |
260 |
nnnnnntannnnnnnngttcgtttttaccttgttatcacgaaaatgggctcaaaagaagataccaaataatgttatttgattatttgaatatagtgaatg |
359 |
Q |
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|| ||||||||||||||| ||||||| ||||| | | ||||| |||||||||| ||| |||||||||||||||||| |||||||| |
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| T |
24471508 |
aaattatatattttttgttcgtttttaccttcttatcactaaaatcgacacaaaattagataccaaaaaatattatttgattatttgaatctagtgaatt |
24471607 |
T |
|
| Q |
360 |
cacaagataatatacattgatgaatacaaataaaaagaagtatagaagaccaaatgtatagaccacaagaagtatgattaatgaatatttcaggcattaa |
459 |
Q |
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|| |||||||||||||||||||||| | |||||| || |||||| |||||||||| ||||| ||| ||||||||||||||| ||||||| ||||| |
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| T |
24471608 |
cagaagataatatacattgatgaatcctaataaatagctgtatagcagaccaaatgaatagagcac---cagtatgattaatgaaattttcaggaattaa |
24471704 |
T |
|
| Q |
460 |
ttcaacctaca |
470 |
Q |
| |
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| |||||||| |
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| T |
24471705 |
tgaaacctaca |
24471715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 24471278 - 24471402
Alignment:
| Q |
1 |
tccatcacctcctccatatcatccctaccactacaactcacccccgcctcccatctattaagcttccggctattatttgtnnnnnnnntcaatgaattat |
100 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
24471278 |
tccatcacctcctccatatcatccctacctctacagctcacccccgcctcccatctattaagcttccggctatcatttg-aaattttttcaatgaattat |
24471376 |
T |
|
| Q |
101 |
attcagcattgttgtggttaatttgt |
126 |
Q |
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|||||||||||||||||||||||||| |
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| T |
24471377 |
attcagcattgttgtggttaatttgt |
24471402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 24475986 - 24475730
Alignment:
| Q |
1 |
tccatcacctcctccatatcatccctaccactacaactcacccccgcctcccatctattaag-cttccggctat---tatttgtnnnnnnnntcaatgaa |
96 |
Q |
| |
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||||| ||||||||||| |||| || | | |||||||||||||||||||||| ||||||||| ||||||||||| |||||| |||| ||| |
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| T |
24475986 |
tccataacctcctccatctcattccgatctctacaactcacccccgcctcccgtctattaaggcttccggctatagttatttg-aaattttttcaaagaa |
24475888 |
T |
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| Q |
97 |
ttatattcagcattgttgtggttaatttgtattcaagcttttgttaataaaa-aagtctatgctttacagtgaattaagagcc---ttattttgattcaa |
192 |
Q |
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||||||||||||||||| |||||||||||||| |||||||||| ||||||| || | ||| | |||| ||||||||||||| |||||| | ||||| |
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| T |
24475887 |
ttatattcagcattgttctggttaatttgtatcgaagcttttgtgaataaaagaattttatacactacaatgaattaagagcctaattatttcggttcaa |
24475788 |
T |
|
| Q |
193 |
atgcatctgtgcatgcatggtgttaattcataagtttgtatttatttatctcctttag |
250 |
Q |
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|||| |||||||| ||||||||||||||||||| |||||||| ||||||||||| |
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| T |
24475787 |
gtgcaattgtgcatgtatggtgttaattcataagtcagtatttatcaatctcctttag |
24475730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 24406279 - 24406228
Alignment:
| Q |
89 |
tcaatgaattatattcagcattgttgtggttaatttgtattcaagcttttgt |
140 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||| |||||||||| |
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| T |
24406279 |
tcaatgaattatgttcaacattgttgtggttaatttgtatttaagcttttgt |
24406228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 24406365 - 24406297
Alignment:
| Q |
5 |
tcacctcctccatatcatccctaccactacaactcacccccgcctcccatctattaagcttccggctat |
73 |
Q |
| |
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||||||||||||||||||||||||| ||| |||| |||||| |||||| |||||||||| ||| ||| |
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| T |
24406365 |
tcacctcctccatatcatccctaccgctataactaacccccacctcccgcgtattaagctttcggatat |
24406297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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