View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16961_low_10 (Length: 245)
Name: NF16961_low_10
Description: NF16961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16961_low_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 34129368 - 34129147
Alignment:
| Q |
16 |
ttaccaactaccataagtatatttggttatgttattagtacctcaaattttaatgcctaaggacattaaatgacatcagtacaaggtaactataggttta |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34129368 |
ttaccaactaccataagtatatttggttatgttattagtacctcaaattttaatgcctaaggacattaaatgaactcagtacaaggtaactataggttta |
34129269 |
T |
|
| Q |
116 |
tgcttgagagagagatttgccatcaatacaggaatagtttagctaggctgtttgatgtccatcagttgcaggttaaccaagccagaatgatggaagtaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34129268 |
tgcttgagagagagatttgccatcaatataggaatagtttagctaggctgtttgatgtccatcagttgcaggttaaccaagccagaatgatggaagtaaa |
34129169 |
T |
|
| Q |
216 |
gtattactgacatgttcatctc |
237 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
34129168 |
gtattactgacatgttcttctc |
34129147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 34137960 - 34137737
Alignment:
| Q |
16 |
ttaccaactaccataagtatatttggttatgttattagtacctcaaattttaatgcctaaggacattaaatgacatcagtacaaggtaactataggttta |
115 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34137960 |
ttaccaactatcataagtatatttggttctgttattagtacctcaaattttaatgctaaaggacattaaatgacatcagtacaaggtaactaaaggttta |
34137861 |
T |
|
| Q |
116 |
tgcttgagagagagatttgcc--atcaatacaggaatagtttagctaggctgtttgatgtccatcagttgcaggttaaccaagccagaatgatggaagta |
213 |
Q |
| |
|
|||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
34137860 |
tgctagagagagagatttgccgtttatatacaggaatagtttagctaggctgtttgatgtccatcatttggaggttaaccaagccagaatgatggaagta |
34137761 |
T |
|
| Q |
214 |
aagtattactgacatgttcatctc |
237 |
Q |
| |
|
||||||||||| ||||||| |||| |
|
|
| T |
34137760 |
aagtattactgtcatgttcttctc |
34137737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 44850744 - 44850670
Alignment:
| Q |
159 |
taggctgtttgatgtccatcagttgcaggttaaccaagccagaatgatggaagtaaagtat-tactgacatgttc |
232 |
Q |
| |
|
|||| ||||||||||| | |||||||| ||||||||||||| |||| |||||||||||||| |||||| |||||| |
|
|
| T |
44850744 |
taggttgtttgatgtctaccagttgcaagttaaccaagccaaaatggtggaagtaaagtatatactgaaatgttc |
44850670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University