View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16961_low_11 (Length: 242)

Name: NF16961_low_11
Description: NF16961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16961_low_11
NF16961_low_11
[»] chr4 (3 HSPs)
chr4 (17-229)||(11853994-11854207)
chr4 (18-130)||(11851380-11851492)
chr4 (30-130)||(11850214-11850314)
[»] chr7 (13 HSPs)
chr7 (17-229)||(29069217-29069431)
chr7 (18-229)||(29111164-29111377)
chr7 (18-193)||(29078413-29078596)
chr7 (17-203)||(28956501-28956695)
chr7 (18-173)||(29058452-29058615)
chr7 (30-130)||(3618780-3618880)
chr7 (18-130)||(29071680-29071792)
chr7 (18-200)||(3617759-3617946)
chr7 (18-130)||(29098093-29098205)
chr7 (26-130)||(29101817-29101921)
chr7 (30-127)||(29115965-29116062)
chr7 (30-130)||(29072855-29072954)
chr7 (18-130)||(29113345-29113457)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 11854207 - 11853994
Alignment:
Q  17 agaacatacatatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattcta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11854207 agaacatacatatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattcta 11854108  T
Q  117 ccgcttggacgacagttc-tgagtacacaaaacttgttaaaataagagtaataaccaacaaaataaaagaagctttggggaaaaatctagatctcttcat 215  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11854107 ccgcttggacgacagttcttgagtacacaaaacttgttaaaataagagtaataaccaacaaaataaaagaagctttggggaaaaatctagatctcttcat 11854008  T
Q  216 tttgtctatgaaac 229  Q
    ||||||||||||||    
T  11854007 tttgtctatgaaac 11853994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 11851492 - 11851380
Alignment:
Q  18 gaacatacatatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattctac 117  Q
    |||||| |||| ||||||||||| ||||||||||||||||||||||| || |||||||  ||||||||||| |  |||||||||||||| || |||||||    
T  11851492 gaacattcataagttgtgtacatctttccttgtacacaacaatcagagtcattctctttgttgcattgtcccgatggagctttctttcccctgattctac 11851393  T
Q  118 cgcttggacgaca 130  Q
    || ||||||||||    
T  11851392 cgtttggacgaca 11851380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 11850214 - 11850314
Alignment:
Q  30 gttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattctaccgcttggacgac 129  Q
    ||||||||||||||||| ||||||||||||||| | || ||||| || || ||||||| || ||||||||| | |||| |||||||||| ||||||||||    
T  11850214 gttgtgtacatttttccctgtacacaacaatcaaagtcattctcctggttacattgtcttgaaggagctttttctcctttaattctaccacttggacgac 11850313  T
Q  130 a 130  Q
    |    
T  11850314 a 11850314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 29069217 - 29069431
Alignment:
Q  17 agaacatacatatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattcta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29069217 agaacatacatatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattacattgtcctggaggagctttctttcctctaattcta 29069316  T
Q  117 ccgcttggacgacagttctgag--------tacacaaaacttgttaaaataagagtaataaccaacaaaataaaagaagctttggggaaaaatctagatc 208  Q
    ||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||      |||    
T  29069317 ccgcttggacgacagttctgagcttctgaatacacaaaacttgttaaaataagagtaataaccaacaaaataaaagaagctttggggcaaa------atc 29069410  T
Q  209 tcttcattttgtctatgaaac 229  Q
    |||||||||||||||||||||    
T  29069411 tcttcattttgtctatgaaac 29069431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 29111164 - 29111377
Alignment:
Q  18 gaacatacatatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattctac 117  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29111164 gaacatacataagttgtgtacatttttccttgtacgcaacaatcagaatcattctcttgattgcattttcctggaggagctttctttcctctaattctac 29111263  T
Q  118 cgcttggacgacagttctgag--------tacacaaaacttgttaaaataagagtaataaccaacaaaataaaagaagctttggggaaaaatctagatct 209  Q
    ||||||| || ||||||||||        |||||||||||||| ||||||||||||||| |||| |||||||||||| |||||||| |||      ||||    
T  29111264 cgcttggtcggcagttctgagcttcggaatacacaaaacttgtaaaaataagagtaatagccaagaaaataaaagaaactttggggcaaa------atct 29111357  T
Q  210 cttcattttgtctatgaaac 229  Q
    ||||||||||||||||||||    
T  29111358 cttcattttgtctatgaaac 29111377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 29078413 - 29078596
Alignment:
Q  18 gaacatacatatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattctac 117  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29078413 gaacatacataagttgtgtacatttttccttctacacaacaatcagaatcattctcttgattgcattgtcctggaggagctttctttcctctaattctac 29078512  T
Q  118 cgcttggacgacagttct--------gagtacacaaaacttgttaaaataagagtaataaccaacaaaataaaagaagctttgg 193  Q
    ||||||||||||| ||||        ||||||||  || |||||||||||||||| |||| |||||||| ||||||||||||||    
T  29078513 cgcttggacgacaattctgagcttcagagtacacgcaatttgttaaaataagagttataatcaacaaaagaaaagaagctttgg 29078596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 28956695 - 28956501
Alignment:
Q  17 agaacatacatatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattcta 116  Q
    ||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||  |||||||    
T  28956695 agaacattcataagttgtgtacattttttcttgtacacaacaatcagaatcgttctcttgattacattgtcctggaggagcattttttccttcaattcta 28956596  T
Q  117 ccgcttggacgaca--------gttctgagtacacaaaacttgttaaaataagagtaataaccaacaaaataaaagaagctttggggaaaaatct 203  Q
    |||||||| || ||         ||| ||||| ||| |||||||||||| |||||||||||  ||||||| |||||||||||||||| |||||||    
T  28956595 ccgcttgggcggcaactctgagcttccgagtatacagaacttgttaaaacaagagtaataatgaacaaaagaaaagaagctttggggcaaaatct 28956501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 29058452 - 29058615
Alignment:
Q  18 gaacatacatatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattctac 117  Q
    |||||| |||| ||||||||||| ||||||||||||||||||||||| || |||||||  ||||||||||| |  |||||||||||||| || |||||||    
T  29058452 gaacattcataagttgtgtacatctttccttgtacacaacaatcagagtcattctctttgttgcattgtccagatggagctttctttcccctgattctac 29058551  T
Q  118 cgcttggacgacagttctgag--------tacacaaaacttgttaaaataagagtaataaccaa 173  Q
    || |||||||||| || ||||        |||||| |||||||||||||||||||||| |||||    
T  29058552 cgtttggacgacacttttgagcttcagaatacacacaacttgttaaaataagagtaatcaccaa 29058615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 3618880 - 3618780
Alignment:
Q  30 gttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattctaccgcttggacgac 129  Q
    ||||||||||||||||||||||||||||||||||| || ||||| || ||||||||||| | ||||||||| | |||| |||||||||| ||||||||||    
T  3618880 gttgtgtacatttttccttgtacacaacaatcagagtcattctcctggttgcattgtccggaaggagctttttctcctttaattctaccacttggacgac 3618781  T
Q  130 a 130  Q
    |    
T  3618780 a 3618780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 29071680 - 29071792
Alignment:
Q  18 gaacatacatatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattctac 117  Q
    |||||| |||| ||||||||||| ||||||||||||||||||||||| || |||||||  ||||||||||| |  |||||||||||||| || |||||||    
T  29071680 gaacattcataagttgtgtacatctttccttgtacacaacaatcagagtcattctctttgttgcattgtcccgatggagctttctttcccctgattctac 29071779  T
Q  118 cgcttggacgaca 130  Q
    || ||||||||||    
T  29071780 cgtttggacgaca 29071792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 3617759 - 3617946
Alignment:
Q  18 gaacatacatatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattctac 117  Q
    |||||| |||| ||||||||||| ||||||||||||||||||||||| || |||||||  || |||||||| |  |||||||||||||| || |||||||    
T  3617759 gaacattcataagttgtgtacatctttccttgtacacaacaatcagagtcattctctttgttacattgtccagatggagctttctttcccctgattctac 3617858  T
Q  118 cgcttggacgacagttctgag--------tacacaaaacttgttaaaataagagtaataaccaacaaaataaaagaagctttggggaaaaa 200  Q
    || | |||||||| || ||||         |||||||||||||||||| |||||||||   ||| |||| ||||||| |||||||| ||||    
T  3617859 cgttcggacgacacttttgagcttcagaaaacacaaaacttgttaaaacaagagtaat---caataaaagaaaagaaactttggggcaaaa 3617946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 29098205 - 29098093
Alignment:
Q  18 gaacatacatatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattctac 117  Q
    |||||| |||| ||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||   |||| | |  ||||| || |||||||    
T  29098205 gaacattcataagttgtatacatttgtccttgtacacaacaatcagaatcattctcttgattgcattgtccacaaggaacctcttttccacttattctac 29098106  T
Q  118 cgcttggacgaca 130  Q
    | |||||||||||    
T  29098105 cacttggacgaca 29098093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 130
Target Start/End: Complemental strand, 29101921 - 29101817
Alignment:
Q  26 atatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattctaccgcttgga 125  Q
    ||||||||||||||||||||| ||||||||||||||||| || ||||| || || |||||||| | ||||| ||| | |||| |||||||||| ||||||    
T  29101921 atatgttgtgtacatttttccctgtacacaacaatcagagtcattctcctggttacattgtccggaaggagttttttctcctttaattctaccacttgga 29101822  T
Q  126 cgaca 130  Q
    |||||    
T  29101821 cgaca 29101817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 30 - 127
Target Start/End: Complemental strand, 29116062 - 29115965
Alignment:
Q  30 gttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattctaccgcttggacg 127  Q
    |||||||||||||||||||| ||||||||||| ||||| || || || ||||||||||| | ||||||||| | |||| |||||||||| ||||||||    
T  29116062 gttgtgtacatttttccttgcacacaacaatctgaatcattttcctggttgcattgtccggaaggagctttttctcctttaattctaccacttggacg 29115965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 29072954 - 29072855
Alignment:
Q  30 gttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagc-tttctttcctctaattctaccgcttggacga 128  Q
    ||||||||||||||||| ||||||||||||||||| || ||||| ||||| |||||||| | |||||| |||||||  | |||||||||| |||||||||    
T  29072954 gttgtgtacatttttccctgtacacaacaatcagagtcattctcctgattacattgtccggaaggagcttttcttt--tttaattctaccacttggacga 29072857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 29113457 - 29113345
Alignment:
Q  18 gaacatacatatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattctac 117  Q
    |||||| |||| |||||  |||||| ||||||||| |||||||||||||| |||||||||||||||||| | | |||||| |  ||||| || ||||||     
T  29113457 gaacattcataagttgtacacatttgtccttgtacccaacaatcagaatcattctcttgattgcattgtgcagaaggagcctcttttccacttattctat 29113358  T
Q  118 cgcttggacgaca 130  Q
    | |||||||||||    
T  29113357 cacttggacgaca 29113345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University