View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16961_low_3 (Length: 401)
Name: NF16961_low_3
Description: NF16961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16961_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 8 - 384
Target Start/End: Complemental strand, 24419847 - 24419472
Alignment:
| Q |
8 |
ccaagaaaatgatgagtttagtattctctccttggatgctatgttatcaagaattacacaattttgattgaataatgagtaacatattagtttgtttgca |
107 |
Q |
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| T |
24419847 |
ccaataaaatgatgagtttagtattctctccttggatgctatgttctcaagaattacacagttttgattgaataatgagtaacatattagtttgtttgct |
24419748 |
T |
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| Q |
108 |
atgactaaaaacaatagaatttctactatatgcatacagtgtatgagtgtgaacaatcatgaatataattgaaatcacaagaatcaagcacaaactatgc |
207 |
Q |
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| T |
24419747 |
atgactaaaaacaatagaacttctactatatgcatacagtgtatgagtgtgaacgatcatgaatataattgaaatcacaagaatcaagcacaaactatgc |
24419648 |
T |
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| Q |
208 |
gaataaacatggatacaaacatagttaaatgtcaaaatttgcttatacttatcactaactaatgcaatttgaatcattgatttgattaggttttgttttg |
307 |
Q |
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| T |
24419647 |
gaataaagatggatacaaacatagttaaatgtcaaaatttgcttatacttatcactaactaatgcaatttgaatcattgatttgatcaggttttgttttg |
24419548 |
T |
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| Q |
308 |
caagaacaaaagggagtatatgaataatgagcacaaagtgtgcataaaagtttacaaccaaaatcatcacccataat |
384 |
Q |
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| T |
24419547 |
caagaacaaaagggagtatattaataatgagca-aaagtgtgcataaaagtttacaaccaaaatcatcacccataat |
24419472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 169 - 384
Target Start/End: Original strand, 24472768 - 24472982
Alignment:
| Q |
169 |
aatataattgaaatcacaagaatcaagcacaaactatgcgaataaacatggatacaaacatagttaaatgtcaaaatttgcttatacttatcactaacta |
268 |
Q |
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| T |
24472768 |
aatataattgaaatcacaagaatcaagcacaaactatgcaagtaaagatggatacaaacatagttaaatgtcaaagtttgcttatacttatcagtaacta |
24472867 |
T |
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| Q |
269 |
atgcaatttgaatcattgatttgattaggttttgttttgcaagaacaaaagggagtatatgaataatgagcacaaagtgtgcataaaagtttacaaccaa |
368 |
Q |
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| T |
24472868 |
atgcaatttgaatcattgatttgatcaggtttttttttgcaagaacaaaagggattatattaataataagca-aaagtgtgcataaaagtttacaaccaa |
24472966 |
T |
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| Q |
369 |
aatcatcacccataat |
384 |
Q |
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| T |
24472967 |
aatcatcacccataat |
24472982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 24471723 - 24471790
Alignment:
| Q |
13 |
aaaatgatgagtttagtattctctccttggatgctatgttatcaagaattacacaattttgattgaat |
80 |
Q |
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| T |
24471723 |
aaaatgatgagtttagtattctctccttggatgctatgttctcaagaattacacagttttgattgaat |
24471790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 24472660 - 24472727
Alignment:
| Q |
96 |
agtttgtttgcaatgactaaaaacaatagaatttcta---ctatatgcatacagtgtatgagtgtgaa |
160 |
Q |
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| T |
24472660 |
agtttgtttgcaataactacaaacaatagaacttctaatactatatgcatgcagtgtatgagtgtgaa |
24472727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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