View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16961_low_9 (Length: 250)
Name: NF16961_low_9
Description: NF16961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16961_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 86 - 243
Target Start/End: Original strand, 47803380 - 47803538
Alignment:
| Q |
86 |
aagcgaatgtttgtaacgtggtggttatgttagtttcacctccnnnnnnnnnn-aaaactcattttacgtcacttagctcaccgcccgagctacctacat |
184 |
Q |
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| T |
47803380 |
aagcgaatgtttgtaacgtggtggttatgttagtttcacctcctttttttttttaaaactcattttacgtcacttagctcaccgcccgagctacctacat |
47803479 |
T |
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| Q |
185 |
aggacactagtatttacatattgattttgaaacatgtacttttcagtaatttcatctca |
243 |
Q |
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| T |
47803480 |
aggacactagtatttacatattgattttgaaacatgtacttttcagtaatttcatctca |
47803538 |
T |
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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 47806322 - 47806359
Alignment:
| Q |
204 |
attgattttgaaacatgtacttttcagtaatttcatct |
241 |
Q |
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| T |
47806322 |
attgattttgaaacatgtacttttcagtaattttatct |
47806359 |
T |
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