View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16962_high_1 (Length: 1045)
Name: NF16962_high_1
Description: NF16962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16962_high_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 694; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 162 - 1033
Target Start/End: Complemental strand, 12121447 - 12120579
Alignment:
| Q |
162 |
acccttgtccttcaggttccttgtcttaaacccattccacttctttagaatcagtc-attctacttccttagccaccctttcgattttctcccataaatt |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| || |
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|
| T |
12121447 |
acccttgtccttcaggttccttgtcttaaacccattccacttctttagaatcagtccattctacttccttagccaacctttcgattttctccc-----tt |
12121353 |
T |
|
| Q |
261 |
gaaccatttatcaccgctctgctgcttgaaaatcacctacttcatgaggagttacctttgtaagatagataaccactgtatgttattaatattacatcac |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12121352 |
gaaccatttatcaccgctctgctgcttgaaaatcacctgcttcatgaggagttacctttgtaagatagataaccactgtatgttcttaatattacatcac |
12121253 |
T |
|
| Q |
361 |
cttgttcaacatcaactagtgctcgaaaagttgcaaagaatgatcttctcagaatcagaggaccctcttccacatcactaatctccatgaccaccacgtc |
460 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
12121252 |
cttgttcaacatcaacaagtgctcgaaaagttgcgaggaatgatcttctcaaaatcagaggaccctcttccacatcactaatctccatgaccactacgtc |
12121153 |
T |
|
| Q |
461 |
tataagaaacacaaaagtgccaattaataccaaaatgtactttacgatgccaccaaaagtttctaatgtacctttttctaacattgctaagaaattagag |
560 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||| |||||| |||||||||||||||||||||| |||||| |
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|
| T |
12121152 |
tataagaaacacaaaagtgccaattattaccaaaatgtactttaccatgcgaccaaaagtttccaatgtaactttttctaacattgctaagaagttagag |
12121053 |
T |
|
| Q |
561 |
gtaacttgtatttctcccatgaggtctatgaacatgttgtatttcttcattcttcccatgagattaaaaatttcatctttttattgcttatttttccctt |
660 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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|
| T |
12121052 |
gtaacttgtatttctcccgtgaggtctatgaacatgttgtatttctccattcttcccatgagattaaaaagttcatctttttatcgcttatttttccctt |
12120953 |
T |
|
| Q |
661 |
tcttccttttgttggtgtcctatggagccgacacttatgactttgcagttgtactcttcaagccttccctttcaattgtatcttctcctccttttctata |
760 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12120952 |
tcttccttttgttggtgtcctatggagtcgacacttatgactttgcagctgtactcttcaagcctcccctttcaattgtatcttctcctccttttctata |
12120853 |
T |
|
| Q |
761 |
ttcttcctcttcgacataactctttgtaaccataaccaatttgcacatcccatttattgagttgttgagagcagtgcctaagactccaacttcagataga |
860 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
12120852 |
ttcttcctcttcaacataactctttgtaaccataaccaatttgcatgtcccatttattgagttgttgagagcagtgcctaagactccagcttcagataga |
12120753 |
T |
|
| Q |
861 |
ttagaaagtttagttgcaatctgacctacttgagtttccaaatattaatggaggatttagtattcctttggggtccctcatca-nnnnnnnnacaatgct |
959 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||| |
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|
| T |
12120752 |
ttagaaagtttagttgcaatttgacctacttgagtttccaaatattaatggaggattcagtattcctttggggtccctcatgatttttttttacaatgct |
12120653 |
T |
|
| Q |
960 |
tcaacatggtcctatgttgtctacatatactgagtaagcatttcccccatattcttcttcggtggttgttgttg |
1033 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
12120652 |
tcaacatggtcctatgttgtctacatatactgagtaagcatttcctccatattcttcttcgatggttgttgttg |
12120579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 1e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 21260034 - 21260183
Alignment:
| Q |
13 |
catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
21260034 |
catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactcttgt |
21260133 |
T |
|
| Q |
113 |
aatgtagatttggaaagaaataaaatgagacctactctatcaatttgaca |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
21260134 |
aatgtagatttggaaagaaataaaatgagacctactgtatcagtttgaca |
21260183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 21264615 - 21264764
Alignment:
| Q |
13 |
catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
21264615 |
catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactcttgt |
21264714 |
T |
|
| Q |
113 |
aatgtagatttggaaagaaataaaatgagacctactctatcaatttgaca |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
21264715 |
aatgtagatttggaaagaaataaaatgagacctactgtatcagtttgaca |
21264764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 3e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 6847758 - 6847899
Alignment:
| Q |
13 |
catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6847758 |
catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactcttgt |
6847857 |
T |
|
| Q |
113 |
aatgtagatttggaaagaaataaaatgagacctactctatca |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6847858 |
aatgtagatttggaaagaaataaaatgagacctactgtatca |
6847899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 6843155 - 6843296
Alignment:
| Q |
13 |
catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6843155 |
catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaatagattttttacttgtatatatagaatacctttacactcttgt |
6843254 |
T |
|
| Q |
113 |
aatgtagatttggaaagaaataaaatgagacctactctatca |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6843255 |
aatgtagatttggaaagaaataaaatgagacctactgtatca |
6843296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 3e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 47805187 - 47805328
Alignment:
| Q |
13 |
catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
47805187 |
catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactcttgt |
47805286 |
T |
|
| Q |
113 |
aatgtagatttggaaagaaataaaatgagacctactctatca |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47805287 |
aatgtagatttggaaagaaataaaatgagacctactgtatca |
47805328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 47800605 - 47800746
Alignment:
| Q |
13 |
catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgt |
112 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
47800605 |
catagggatttgatttgtaatcaaaaataatttaccattatttcaatctagtaaaaataggttttttacttgtatatatagaatacctttacactcttgt |
47800704 |
T |
|
| Q |
113 |
aatgtagatttggaaagaaataaaatgagacctactctatca |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47800705 |
aatgtagatttggaaagaaataaaatgagacctactgtatca |
47800746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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