View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16962_high_4 (Length: 377)
Name: NF16962_high_4
Description: NF16962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16962_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 7 - 366
Target Start/End: Complemental strand, 37531241 - 37530886
Alignment:
| Q |
7 |
cagatacccccaaataaagaggaaaagtgatacaaataatggtcataataatttattatgtaaaattgagaggtttagcaaaagagagatttaaaaatgg |
106 |
Q |
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| T |
37531241 |
cagatacccccaaataaagaggaaaagtgatacaaataatggtcataataatttattatgtaaaattgagaggtttagcaaaagagagatttaaaaatgg |
37531142 |
T |
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| Q |
107 |
agaatcaaacgatgattatttattaaagaatatatataaaatatagcaaaagcgaaccaacgggaagcacctgaagtgggagaaggaagccgcaaatata |
206 |
Q |
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| T |
37531141 |
agaatcaaacgatgattatttattaaagaatatatataaaatatagcaaaagcgaaccaacgggaagcacctgaagtgggagaaggaagccgcaaatata |
37531042 |
T |
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| Q |
207 |
gattagtgctaaactatggcctatggacaagattatactagttagttaaatgatacattatgggaagatagtactgttgctctattatatgcaaccactt |
306 |
Q |
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| T |
37531041 |
gattagtgctaaactatggcctatggacaagattatacta----gttaaatgatacattatgggaagatagtactgttgctctattatatgcaaccactt |
37530946 |
T |
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| Q |
307 |
gcaaatatgcggaattataaaactcgctatttattcccccttcttggggacaattttcat |
366 |
Q |
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| T |
37530945 |
gcaaatatgcggaattataaaactcgctatttattcccccttcttggggacaattttcat |
37530886 |
T |
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