View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16962_high_8 (Length: 201)
Name: NF16962_high_8
Description: NF16962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16962_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 117; Significance: 8e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 27 - 186
Target Start/End: Complemental strand, 20741379 - 20741221
Alignment:
| Q |
27 |
tattgagaaaaaagagaataacaaaatacatagaagattgaaaacttcatatatgtaatacaaacaagggagagtatttaaactagctagccctctcnnn |
126 |
Q |
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| T |
20741379 |
tattgagaaaaaagagaataataaaatacatagaagattgaaaacttcatatatgtaatacaaacaagggagagtatataaactagctagccctctc-aa |
20741281 |
T |
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| Q |
127 |
nnnnnnnttggactagctagtgtgtcacattttggcaagatggaacacatgacaaatatt |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20741280 |
aaaaatattggactagctagtgtgtcacattttggcaagatggaacacatgacaaatatt |
20741221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 27 - 186
Target Start/End: Complemental strand, 20733528 - 20733370
Alignment:
| Q |
27 |
tattgagaaaaaagagaataacaaaatacatagaagattgaaaacttcatatatgtaatacaaacaagggagagtatttaaactagctagccctctcnnn |
126 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
20733528 |
tattgagaaaaaagagaataataaaatacatagaagattgaaaacttcatatatataatacaaataagggagagtatttaaactagctagccctct-taa |
20733430 |
T |
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| Q |
127 |
nnnnnnnttggactagctagtgtgtcacattttggcaagatggaacacatgacaaatatt |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20733429 |
aaaaaaattggactagctagtgtgtcacattttggcaagatggaacacatgacaaatatt |
20733370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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