View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16962_low_2 (Length: 518)
Name: NF16962_low_2
Description: NF16962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16962_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Original strand, 6189724 - 6190145
Alignment:
| Q |
18 |
ataactagaacaataggagtctgatgatgaacaagtggcatcttcaacttactcacatttataatcagacaattcagatcgcaaattaacttttgggttg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6189724 |
ataactagaacaataggagtctgatgatgaacaagtggcatgttcaacttactcacatttataatcagacaattcagatcgcaaattaacttttgggttg |
6189823 |
T |
|
| Q |
118 |
cacgctcattttacctgcggatactcatttgctttttcatccttatctgggttgcgttgaccttttattgtaggatgttgccaatattttttattttgac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6189824 |
cacgctcattttacctgcggatactcatttgctttttcatccttatctgggttgtgttgactttttattgtaggatgttgccaatattttttattttgac |
6189923 |
T |
|
| Q |
218 |
caccatattcatttgtaatttgacataacggcctccattttataaaataaaccagacatacttcccaattttctagaataaaaaccatagctctttggca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6189924 |
caccatattcatttgtaatttgacataacggcctccattttataaaataaaccagacatacttcccaattttctagaataaaaaccatagctctttggca |
6190023 |
T |
|
| Q |
318 |
aagacacagtccctgaaaatgtggatggaannnnnnnncacgagttgtgcatcttttcgaaataaaaatgttttgtttttgtctgcaaaattgtcgacaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6190024 |
aagacacagtccctgaaaatgtggatggaattttttttcacgagttgtgcatcttttcgaaataaaaatgttttgtttttgtctgcacaattgtcgacaa |
6190123 |
T |
|
| Q |
418 |
ctgacatcgtatatgaatacag |
439 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
6190124 |
ctgacatcgtatatgaatacag |
6190145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 474 - 502
Target Start/End: Original strand, 6190180 - 6190208
Alignment:
| Q |
474 |
ttgtgcacatattcattctacttgtattt |
502 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6190180 |
ttgtgcacatattcattctacttgtattt |
6190208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University