View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16962_low_5 (Length: 289)
Name: NF16962_low_5
Description: NF16962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16962_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 15447272 - 15446991
Alignment:
| Q |
1 |
aacttttcaaatgttgatcaccttgacttgtctcaaaatgagaatcttgtgattaatgatttgagatggcttcttcgtctctcatcatccttacaatttc |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15447272 |
aacttttcaaatgttgttcaccttgacttgtctcaaaatgagaatcttgtgattaatgatttgagatggcttcttcgtctctcatcatccttacaatttc |
15447173 |
T |
|
| Q |
101 |
tcaacctggattatgttgatctccacaaggaaacgctttgacttcagatattgaatatgcttccttcactttctgagttacatttgagtagttgcttact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15447172 |
tcaacctggattatgttgatctccacaaggaaacgctttggcttcagatattgaatatgcttccttcactttctgagttacatttgagtagttgcttact |
15447073 |
T |
|
| Q |
201 |
tgaaagtgtgcacccgtctctttcatatgtcaatttcacctcacttgaatatcttgatctttcttacaataatttcttctct |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15447072 |
tgaaagtgtgcacccgtctctttcatatgtcaatttcacctcacttgaatatcttgatctttcttacaataatttcttctct |
15446991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 15303524 - 15303261
Alignment:
| Q |
1 |
aacttttcaaatgttgatcaccttgacttgtctcaaaatgagaatcttgtgattaatgatttgagatggcttcttcgtctctcatcatccttacaatttc |
100 |
Q |
| |
|
|||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15303524 |
aacttttccaatgtttttcatcttgacttgtctcaaaatgagaatcttgtgattaatgatttgagatggcttcttcgtctctcatcatccttacaattta |
15303425 |
T |
|
| Q |
101 |
tcaacctggattatgttgatctccacaaggaaacgctttgacttcagatattgaatatgcttccttcactttctgagttacatttgagtagttgcttact |
200 |
Q |
| |
|
||||||||||||||||| || ||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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|
| T |
15303424 |
tcaacctggattatgttaatatccacaaggaaacacattggcttcagatattgaatatgcttccttcactttctgagttatatttgagtagttgctcact |
15303325 |
T |
|
| Q |
201 |
tgaaagtgtgcacccgtctctttcatatgtcaatttcacctcacttgaatatcttgatctttct |
264 |
Q |
| |
|
||||||| || |||||||||| |||||| ||||||||| |||||||||||||||||||||||| |
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| T |
15303324 |
tgaaagtttgagcccgtctcttccatatgccaatttcacttcacttgaatatcttgatctttct |
15303261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 15483893 - 15483630
Alignment:
| Q |
1 |
aacttttcaaatgttgatcaccttgacttgtctcaaaatgagaatcttgtgattaatgatttgagatggcttcttcgtctctcatcatccttacaatttc |
100 |
Q |
| |
|
|||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15483893 |
aacttttccaatgtttttcatcttgacttgtctcaaaatgagaatcttgtgattaatgatttgagatggcttcttcgtctctcatcatccttacaattta |
15483794 |
T |
|
| Q |
101 |
tcaacctggattatgttgatctccacaaggaaacgctttgacttcagatattgaatatgcttccttcactttctgagttacatttgagtagttgcttact |
200 |
Q |
| |
|
||||||||||||||||| || ||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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|
| T |
15483793 |
tcaacctggattatgttaatatccacaaggaaacacattggcttcagatattgaatatgcttccttcactttctgagttatatttgagtagttgctcact |
15483694 |
T |
|
| Q |
201 |
tgaaagtgtgcacccgtctctttcatatgtcaatttcacctcacttgaatatcttgatctttct |
264 |
Q |
| |
|
||||||| || |||||||||| |||||| ||||||||| |||||||||||||||||||||||| |
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|
| T |
15483693 |
tgaaagtttgagcccgtctcttccatatgccaatttcacttcacttgaatatcttgatctttct |
15483630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 15285009 - 15284746
Alignment:
| Q |
1 |
aacttttcaaatgttgatcaccttgacttgtctcaaaatgagaatcttgtgattaatgatttgagatggcttcttcgtctctcatcatccttacaatttc |
100 |
Q |
| |
|
|||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15285009 |
aacttttccaatgtttttcatcttgacttgtctcaaaatgagaatcttgtgattaatgatttgagatggcttcttcgtctctcatcatccttacaatttc |
15284910 |
T |
|
| Q |
101 |
tcaacctggattatgttgatctccacaaggaaacgctttgacttcagatattgaatatgcttccttcactttctgagttacatttgagtagttgcttact |
200 |
Q |
| |
|
|||||||| ||| ||| |||||||||||||||||| ||| |||||| ||||||||||| ||||||||||||| |||||| ||||||||||||||| ||| |
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|
| T |
15284909 |
tcaacctgaattccgttaatctccacaaggaaacgcattggcttcagctattgaatatgtttccttcactttccgagttatatttgagtagttgctcact |
15284810 |
T |
|
| Q |
201 |
tgaaagtgtgcacccgtctctttcatatgtcaatttcacctcacttgaatatcttgatctttct |
264 |
Q |
| |
|
|||||||||| ||||||| |||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
15284809 |
tgaaagtgtgagtatgtctcttccatatgccaatttcacttcacttgaatatcttgatctttct |
15284746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 15465378 - 15465115
Alignment:
| Q |
1 |
aacttttcaaatgttgatcaccttgacttgtctcaaaatgagaatcttgtgattaatgatttgagatggcttcttcgtctctcatcatccttacaatttc |
100 |
Q |
| |
|
|||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15465378 |
aacttttccaatgtttttcatcttgacttgtctcaaaatgagaatcttgtgattaatgatttgagatggcttcttcgtctctcatcatccttacaatttc |
15465279 |
T |
|
| Q |
101 |
tcaacctggattatgttgatctccacaaggaaacgctttgacttcagatattgaatatgcttccttcactttctgagttacatttgagtagttgcttact |
200 |
Q |
| |
|
|||||||| ||| ||| |||||||||||||||||| ||| |||||| ||||||||||| ||||||||||||| |||||| ||||||||||||||| ||| |
|
|
| T |
15465278 |
tcaacctgaattccgttaatctccacaaggaaacgcattggcttcagctattgaatatgtttccttcactttccgagttatatttgagtagttgctcact |
15465179 |
T |
|
| Q |
201 |
tgaaagtgtgcacccgtctctttcatatgtcaatttcacctcacttgaatatcttgatctttct |
264 |
Q |
| |
|
|||||||||| ||||||| |||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
15465178 |
tgaaagtgtgagtatgtctcttccatatgccaatttcacttcacttgaatatcttgatctttct |
15465115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 15314389 - 15314108
Alignment:
| Q |
1 |
aacttttcaaatgttgatcaccttgacttgtctcaaaatgagaatcttgtgattaatgatttgagatggcttcttcgtctctcatcatccttacaatttc |
100 |
Q |
| |
|
|||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15314389 |
aacttttccaatgtttttcatcttgacttgtctcaaaatgagaatcttgtgattaatgatttgagatggcttcttcgtctctcgtcatccttacaatttc |
15314290 |
T |
|
| Q |
101 |
tcaacctggattatgttgatctccacaaggaaacgctttgacttcagatattgaatatgcttccttcactttctgagttacatttgagtagttgcttact |
200 |
Q |
| |
|
|||||||||| | |||||||||| | |||||| | ||| ||||| ||||||| |||| |||||||||||||||||||||||||| ||| || || |
|
|
| T |
15314289 |
tcaacctggactccattgatctccatagggaaactcgttggcttcaaatattgactatgtttccttcactttctgagttacatttgtataggtgtcagct |
15314190 |
T |
|
| Q |
201 |
tgaaagtgtgcacccgtctctttcatatgtcaatttcacctcacttgaatatcttgatctttcttacaataatttcttctct |
282 |
Q |
| |
|
| |||||| | ||||||| ||||| ||| ||||| || ||||||||||||||||||||| | ||| ||||||||||| |
|
|
| T |
15314189 |
taaaagtgctagtcagtctcttctatatgccaacttcacttcccttgaatatcttgatctttctcaaaatgatttcttctct |
15314108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 15494758 - 15494477
Alignment:
| Q |
1 |
aacttttcaaatgttgatcaccttgacttgtctcaaaatgagaatcttgtgattaatgatttgagatggcttcttcgtctctcatcatccttacaatttc |
100 |
Q |
| |
|
|||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15494758 |
aacttttccaatgtttttcatcttgacttgtctcaaaatgagaatcttgtgattaatgatttgagatggcttcttcgtctctcgtcatccttacaatttc |
15494659 |
T |
|
| Q |
101 |
tcaacctggattatgttgatctccacaaggaaacgctttgacttcagatattgaatatgcttccttcactttctgagttacatttgagtagttgcttact |
200 |
Q |
| |
|
|||||||||| | |||||||||| | |||||| | ||| ||||| ||||||| |||| |||||||||||||||||||||||||| ||| || || |
|
|
| T |
15494658 |
tcaacctggactccattgatctccatagggaaactcgttggcttcaaatattgactatgtttccttcactttctgagttacatttgtataggtgtcagct |
15494559 |
T |
|
| Q |
201 |
tgaaagtgtgcacccgtctctttcatatgtcaatttcacctcacttgaatatcttgatctttcttacaataatttcttctct |
282 |
Q |
| |
|
| |||||| | ||||||| ||||| ||| ||||| || ||||||||||||||||||||| | ||| ||||||||||| |
|
|
| T |
15494558 |
taaaagtgctagtcagtctcttctatatgccaacttcacttcccttgaatatcttgatctttctcaaaatgatttcttctct |
15494477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 18053012 - 18052738
Alignment:
| Q |
1 |
aacttttcaaatgttgatcaccttgacttgtctcaaaatgagaatcttgtgattaatgatttgagatggcttcttcgtctctcatcatccttacaatttc |
100 |
Q |
| |
|
|||||||| |||||| ||| ||||| ||||| ||||||||||||||||||| ||||||||| |||||||||||| || ||||||| || ||| || |
|
|
| T |
18053012 |
aacttttccgatgttgttcatcttgatttgtcaggaaatgagaatcttgtgattgatgatttgaaatggcttcttcgcctatcatcat---tagaatatc |
18052916 |
T |
|
| Q |
101 |
tcaacctggattatgttgatctccacaaggaaacgctttgacttcagatattgaatatgcttccttcactttctgagttacatttgagtagttgcttact |
200 |
Q |
| |
|
||||| | |||| ||||||| | ||| |||| | ||| ||||| || || | |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
18052915 |
tcaactttgatttcattgatcttcgcaaagaaaatcattggcttcaaatgttaactatgcttccttcgctttctgagttacatttgagtagttgcttact |
18052816 |
T |
|
| Q |
201 |
tgaaagtgtgcacccgtctctttcatatgtcaatttcacctcacttgaatatcttgatctttcttacaataatttctt |
278 |
Q |
| |
|
||||| | | | || |||||| ||||| |||||| || |||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
18052815 |
tgaaaacgcgaatccatctcttcaatatgccaattttacatcacttgaatatcttgatctttctgacaatgatttctt |
18052738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 264
Target Start/End: Complemental strand, 15298606 - 15298500
Alignment:
| Q |
158 |
tgcttccttcactttctgagttacatttgagtagttgcttacttgaaagtgtgcacccgtctctttcatatgtcaatttcacctcacttgaatatcttga |
257 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||| ||| |||||||||| || | |||| ||| |||||| |||||| | || |||||| ||||||| |
|
|
| T |
15298606 |
tgcttccttcactttcagagttatatttgagtagtggctcacttgaaagtttgagctcgtcacttccatatgccaattttatttcgcttgaagatcttga |
15298507 |
T |
|
| Q |
258 |
tctttct |
264 |
Q |
| |
|
| ||||| |
|
|
| T |
15298506 |
tgtttct |
15298500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 264
Target Start/End: Complemental strand, 15478975 - 15478869
Alignment:
| Q |
158 |
tgcttccttcactttctgagttacatttgagtagttgcttacttgaaagtgtgcacccgtctctttcatatgtcaatttcacctcacttgaatatcttga |
257 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||| ||| |||||||||| || | |||| ||| |||||| |||||| | || |||||| ||||||| |
|
|
| T |
15478975 |
tgcttccttcactttcagagttatatttgagtagtggctcacttgaaagtttgagctcgtcacttccatatgccaattttatttcgcttgaagatcttga |
15478876 |
T |
|
| Q |
258 |
tctttct |
264 |
Q |
| |
|
| ||||| |
|
|
| T |
15478875 |
tgtttct |
15478869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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