View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16962_low_8 (Length: 250)
Name: NF16962_low_8
Description: NF16962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16962_low_8 |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: scaffold0172 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 8512 - 8301
Alignment:
| Q |
16 |
aacaatcgaattcgccttcattaggggataaaccaaatattgttaatgtgaagaatgaaacgaaacctatcgaacactctagtaaaggttattgtgaaga |
115 |
Q |
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| T |
8512 |
aacaatcgaattcgccttcattaggggataaaccaaatattgttaatgtgaagaatgaaacgaaacctatcgaacactctagtaaaggttattgtgaaga |
8413 |
T |
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| Q |
116 |
ttcagaggatgacgatgatgataaaccattgagttctaagtggaagatcaaatctaatcatgataagaaagttgtagcccctgttgttatcaagaaatct |
215 |
Q |
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| T |
8412 |
ttcagaggatgacgatgatgataaaccattgagttctaagtggaagatcaaatctaatcatgataacaaagttgtagctcctgttgttatcaagaaatct |
8313 |
T |
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| Q |
216 |
tctcaagactcg |
227 |
Q |
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| T |
8312 |
tctcaagactcg |
8301 |
T |
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