View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16963_high_2 (Length: 318)
Name: NF16963_high_2
Description: NF16963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16963_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 9 - 303
Target Start/End: Complemental strand, 4488718 - 4488424
Alignment:
| Q |
9 |
agcagagagtataaagaatttgaggctcaattccggagaacgttttggtcaaagaatccagaggaagataaccgatacccaggattttatgctctacaag |
108 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4488718 |
agcagggagtataaagaatttgaggctcaattccggagaacgttttggtcaaagaatccagaggaagataaccgatacccaggattttatgctctacaag |
4488619 |
T |
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| Q |
109 |
catatgatagcattaacattgtaactcaagctttgaacagaatgaccagtaggaagaatagcagcccaaagactttactaagagaaatactttcttgcaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4488618 |
catatgatagcattaacattgtaactcaagctttgaacagaatgaccagtaggaagaatagcagcccaaagactttactaagagaaatactttcttgcaa |
4488519 |
T |
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| Q |
209 |
tttcattggtttaagtggccatattcaacttgaatctggccaactcatgcagaagaatcttgtcttaaggatagtaaatgtggctgggaagagtt |
303 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4488518 |
tttccttggtttaagtggccatattcaacttgaatctggccaactcatgcagaagaatcttgtcttaaggatagtaaatgtggctgggaagagtt |
4488424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 303
Target Start/End: Complemental strand, 4483750 - 4483456
Alignment:
| Q |
9 |
agcagagagtataaagaatttgaggctcaattccggagaacgttttggtcaaagaatccagaggaagataaccgatacccaggattttatgctctacaag |
108 |
Q |
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||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4483750 |
agcagggagtataaagaatttaaggctcaattccagagaacgttttggtcaaagaatccagaggaagataaccgatacccaggattttatgctctacaag |
4483651 |
T |
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| Q |
109 |
catatgatagcattaacattgtaactcaagctttgaacagaatgaccagtaggaagaatagcagcccaaagactttactaagagaaatactttcttgcaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| ||||||| ||| |||| |
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| T |
4483650 |
catatgatagcattaacattgtaactcaagctttcaacagaatgaccagtaggaacaatagcagcccaaaatttttactaagcgaaatacagtctagcaa |
4483551 |
T |
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| Q |
209 |
tttcattggtttaagtggccatattcaacttgaatctggccaactcatgcagaagaatcttgtcttaaggatagtaaatgtggctgggaagagtt |
303 |
Q |
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|||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||| |||||||||| |||||||||||||| |||| |
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| T |
4483550 |
tttcattggtttaagtggccatattcaacttgaagctggacaagtcatgcagaagaatcttgtcctaaggatagttaatgtggctgggaaaagtt |
4483456 |
T |
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