View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16963_low_1 (Length: 516)
Name: NF16963_low_1
Description: NF16963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16963_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Original strand, 44006287 - 44006793
Alignment:
| Q |
1 |
tcctgtctaaagtaacatgatgattatgtcattacggaaaaaattatttaaccaataaccatgtttatagtagccaattatcaatcaagaaaaagtaatc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006287 |
tcctgtctaaagtaacatgatgattatgtcattacggaaaaaattatttaaccaataaccatgtttatagtagccaattatcaatcaagaaaaagtaatc |
44006386 |
T |
|
| Q |
101 |
aattgatgtgtgataactcttcattagtaaaa--gtttttcggcatcttttagtgtcatctgcgtatttatttgttattagtattaccgatttaggnnnn |
198 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006387 |
aattgatgtgtgataactcttcattagtaaaaaagtttttcggcatcttttagtgtcatctgcgtatttatttgttattagtattaccgatttaggtttt |
44006486 |
T |
|
| Q |
199 |
nnnnnnnngacattcatcaaagtagtattaatttatggaggaatatagtcaaaaacttggcaactagcataaaacaatgctgctctagctagaagatgag |
298 |
Q |
| |
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| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006487 |
ttttttttggcattcatcaaagtagtattaatatatggaggaatatagtcaaaaacttggcaactagcataaaacaatgctgctctagctag-------- |
44006578 |
T |
|
| Q |
299 |
caacattgttggtttgcctccgaataaaacctatccaaaagtttggtaaagaatacaagattgtcgtacaagccaacaaagtactatcccctctgttcta |
398 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44006579 |
caacattgttggtttgtctccgaataaaacctctccaaaagtttggtaaagaatacaagattgtcgtacaagccaataaagtactatcccctctgttcta |
44006678 |
T |
|
| Q |
399 |
tgactaggtcttcccgccatgccatctatgactagtttggaatctagttcaattgacgctttggagaagcttatattcataagccacattaaagcttgct |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006679 |
tgactaggtcttcccgccatgccatctatgactagtttggaatctagttcaattgacgctttggagaagcttatattcataagccacattaaagcttgct |
44006778 |
T |
|
| Q |
499 |
ttaaacctatgctac |
513 |
Q |
| |
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||||||| ||||||| |
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| T |
44006779 |
ttaaacccatgctac |
44006793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 209 - 481
Target Start/End: Complemental strand, 24152715 - 24152445
Alignment:
| Q |
209 |
cattcatcaaagtagtattaatttatggaggaatatagtcaaaaacttggcaactagcataaaacaatgctgctctagctagaagatgagcaacattgtt |
308 |
Q |
| |
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||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||||||| ||||||| ||||||||||| ||| ||| |||||| |
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| T |
24152715 |
cattcatcaaagtagtagtaatacatggaggaatataatcaaagacttggcaactagcataagacaatgc--gactagctagaaggtgaacaatattgtt |
24152618 |
T |
|
| Q |
309 |
ggtttgcctccgaataaaacctatccaaaagtttggtaaagaatacaagattgtcgtacaagccaacaaagtactatccc-ctctgttctatgactaggt |
407 |
Q |
| |
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||||| ||||||| ||||| ||||| |||||||||||||||||| || | ||| | ||||| | ||| ||||| ||| || |||| ||||||| ||| |
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| T |
24152617 |
tgtttgtctccgaagaaaacttatccgaaagtttggtaaagaatataaaaatgttttgcaagcacataaaatactaccccactatgttgtatgacttggt |
24152518 |
T |
|
| Q |
408 |
cttcccgccatgccatctatgactagtttggaatctagttcaattgacgctttggagaagcttatattcataag |
481 |
Q |
| |
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| T |
24152517 |
c-tcccgccatgccgtccacgagtagtttggaatctagttcaataaacactttgcagaagcctaaattcataag |
24152445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 209 - 501
Target Start/End: Complemental strand, 24147276 - 24146985
Alignment:
| Q |
209 |
cattcatcaaagtagtattaatttatggaggaatatagtcaaaaacttggcaactagcataaaacaatgctgctctagctagaagatgagcaacattgtt |
308 |
Q |
| |
|
|||| |||||||||||| |||| ||||||| ||||| ||| | ||||||||||||||| || |||| || | ||||||||||| |||||||||||||| |
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| T |
24147276 |
cattaatcaaagtagtagtaatacatggaggtatataatcagagacttggcaactagcacaagacaacgc--cactagctagaaggtgagcaacattgtt |
24147179 |
T |
|
| Q |
309 |
ggtttgcctccgaataaaacctatccaaaagtttggtaaagaatacaagattgtcgtacaagccaacaaagtactatccc-ctctgttctatgactaggt |
407 |
Q |
| |
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||||| ||||||| ||||| ||||| ||||||||||||||||| || | ||| | ||||| | ||| ||||| ||| || |||| ||||||| ||| |
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| T |
24147178 |
tgtttgtctccgaagaaaacttatccgtaagtttggtaaagaatataaaaatgttttgcaagcacataaaatactaccccactttgttgtatgacttggt |
24147079 |
T |
|
| Q |
408 |
cttcccgccatgccatctatgactagtttggaatctagttcaattgacgctttggagaagcttatattcataag-ccacattaaagcttgcttta |
501 |
Q |
| |
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| T |
24147078 |
c-tcccgccatgccgtccacgagtagtttggaatctagttcaataaacactttgcagaagcctaaattcataagaacacagtagagcttgcttta |
24146985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 361
Target Start/End: Complemental strand, 43228140 - 43227988
Alignment:
| Q |
209 |
cattcatcaaagtagtattaatttatggaggaatatagtcaaaaacttggcaactagcataaaacaatgctgctctagctagaagatgagcaacattgtt |
308 |
Q |
| |
|
|||||||||| |||||| |||| |||||||||||||| |||||||||| || ||| | || |||||| |||| |||||||| |||| ||| || |
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| T |
43228140 |
cattcatcaaggtagtaataatatatggaggaatataatcaaaaacttaagaaatagtacaagacaatgtcatactagatagaagatatgcaatattatt |
43228041 |
T |
|
| Q |
309 |
ggtttgcctccgaataaaacctatccaaaagtttggtaaagaatacaagattg |
361 |
Q |
| |
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||||| ||||| ||||| ||||| ||||||||||| |||||||||||||| |
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| T |
43228040 |
ggtttatctccgtgtaaaatttatccgaaagtttggtatagaatacaagattg |
43227988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 351
Target Start/End: Original strand, 35379011 - 35379060
Alignment:
| Q |
302 |
cattgttggtttgcctccgaataaaacctatccaaaagtttggtaaagaa |
351 |
Q |
| |
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||||||||| || ||| ||||||||||||| || |||||||||||||||| |
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|
| T |
35379011 |
cattgttggcttaccttcgaataaaacctaacctaaagtttggtaaagaa |
35379060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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