View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16963_low_2 (Length: 400)
Name: NF16963_low_2
Description: NF16963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16963_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 40061987 - 40061592
Alignment:
| Q |
1 |
tttacttaccttttggatcgaacactagattaccaaggtcattttcttttgagatccatagccttcacnnnnnnnnnnnnn------tcaaagtcagcta |
94 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40061987 |
tttacttatcttttggatcgaaccctagattaccaaggtcattttcttttgagatccatagccttcacccaaaaaataaacaaataatcaaagtcagcta |
40061888 |
T |
|
| Q |
95 |
caaataatttgtagttacgtgctgccaaaccttttggttgctatgatgttggatatccactattactgactaactaagaggtttacaagaaaccgcaaaa |
194 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40061887 |
caaataatttgtagttgcgtgctgccaaaccttttggttgctatgatgttggatatccactattactaactaactaagaggtttacaagaaaccgcaaaa |
40061788 |
T |
|
| Q |
195 |
tagnnnnnnnggcatgcaggggcacataggaatgtcaaatgtgcatattcttacataagtagcacactaatttataaaaattccacttagttatcctaaa |
294 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40061787 |
tagtttttttggcatgcaggggcacataggaatgtcaaatgtgcatattcttacataagtagcacactaatttataaaaattccacttagttatcctaaa |
40061688 |
T |
|
| Q |
295 |
ttcacgatgataatctagttgactatgcaatggaatattaggaaagtacgtcaaacaatgcatgctccacaatccaaacaatgatggatccctttg |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40061687 |
ttcacgatgataatctagttgactatgcaatggaatattaggaaagtacgtcaaacaatgcatgctccacaatccaaacaatgatggatccctttg |
40061592 |
T |
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