View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16963_low_3 (Length: 318)

Name: NF16963_low_3
Description: NF16963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16963_low_3
NF16963_low_3
[»] chr2 (2 HSPs)
chr2 (9-303)||(4488424-4488718)
chr2 (9-303)||(4483456-4483750)


Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 9 - 303
Target Start/End: Complemental strand, 4488718 - 4488424
Alignment:
Q  9 agcagagagtataaagaatttgaggctcaattccggagaacgttttggtcaaagaatccagaggaagataaccgatacccaggattttatgctctacaag 108  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4488718 agcagggagtataaagaatttgaggctcaattccggagaacgttttggtcaaagaatccagaggaagataaccgatacccaggattttatgctctacaag 4488619  T
Q  109 catatgatagcattaacattgtaactcaagctttgaacagaatgaccagtaggaagaatagcagcccaaagactttactaagagaaatactttcttgcaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4488618 catatgatagcattaacattgtaactcaagctttgaacagaatgaccagtaggaagaatagcagcccaaagactttactaagagaaatactttcttgcaa 4488519  T
Q  209 tttcattggtttaagtggccatattcaacttgaatctggccaactcatgcagaagaatcttgtcttaaggatagtaaatgtggctgggaagagtt 303  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4488518 tttccttggtttaagtggccatattcaacttgaatctggccaactcatgcagaagaatcttgtcttaaggatagtaaatgtggctgggaagagtt 4488424  T

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Target: chr2; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 303
Target Start/End: Complemental strand, 4483750 - 4483456
Alignment:
Q  9 agcagagagtataaagaatttgaggctcaattccggagaacgttttggtcaaagaatccagaggaagataaccgatacccaggattttatgctctacaag 108  Q
    ||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4483750 agcagggagtataaagaatttaaggctcaattccagagaacgttttggtcaaagaatccagaggaagataaccgatacccaggattttatgctctacaag 4483651  T
Q  109 catatgatagcattaacattgtaactcaagctttgaacagaatgaccagtaggaagaatagcagcccaaagactttactaagagaaatactttcttgcaa 208  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||   ||||||||| |||||||  ||| ||||    
T  4483650 catatgatagcattaacattgtaactcaagctttcaacagaatgaccagtaggaacaatagcagcccaaaatttttactaagcgaaatacagtctagcaa 4483551  T
Q  209 tttcattggtttaagtggccatattcaacttgaatctggccaactcatgcagaagaatcttgtcttaaggatagtaaatgtggctgggaagagtt 303  Q
    |||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||| |||||||||| |||||||||||||| ||||    
T  4483550 tttcattggtttaagtggccatattcaacttgaagctggacaagtcatgcagaagaatcttgtcctaaggatagttaatgtggctgggaaaagtt 4483456  T

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