View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16964_high_3 (Length: 531)
Name: NF16964_high_3
Description: NF16964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16964_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 16 - 422
Target Start/End: Original strand, 37322255 - 37322661
Alignment:
| Q |
16 |
cattaggcacatcaaataggtttttcataaattctactagcttatcatcaaaagcacggtcaaatagaaaatcataagttccaatacaatctcaacaaga |
115 |
Q |
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| T |
37322255 |
cattaggcacatcaaataggtttttcataaattctactagcttatcatcaaaagcacagtcaaatagaaaatcataagttccaatacaatctcaacaaga |
37322354 |
T |
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| Q |
116 |
atggatagaatcaacatccaataatttgctattgttagaagttgatagataatattgtggaaactttataatttatatattactacaatggtgtgttatt |
215 |
Q |
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| T |
37322355 |
atggatagaatcaacatccaataatttgctattgttagaagttgatagataatattgtggaaactttataatttatatattactacaatggtgtgttatt |
37322454 |
T |
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| Q |
216 |
tagatacatgattgcaacttgatatctcttgagtgtgaagtggagatgaattctttcatggcatataagagtctattgaaatcatcaccttctattataa |
315 |
Q |
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| T |
37322455 |
tagatacatgattgcaacttgatatctcttgagtgtgaagtggagatgaattctttcatggcatgtaagagtctattgaaatcatcaccttctattatca |
37322554 |
T |
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| Q |
316 |
aagagagacaaatcaaatgtatacaaagaaaaggtgatttaagggtatagaacacttgagaaaatacaagaaaattaaaaatgaattttgggggtccatt |
415 |
Q |
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| T |
37322555 |
aagagagataaatcaaatgtatacaaagaaaaggtgatttaagggtatagaacacttgagaaaatacaagaaaattaaaaataaattttgggggtccatt |
37322654 |
T |
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| Q |
416 |
ttcgtgt |
422 |
Q |
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| T |
37322655 |
ttcgtgt |
37322661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 484 - 525
Target Start/End: Original strand, 37323047 - 37323088
Alignment:
| Q |
484 |
aatattattgatgaaagaaattttttcaaccattaatcatta |
525 |
Q |
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| T |
37323047 |
aatattattgatgaaataaattttttcaaccattaatcatta |
37323088 |
T |
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