View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16964_low_1 (Length: 769)
Name: NF16964_low_1
Description: NF16964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16964_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 624; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 1 - 746
Target Start/End: Complemental strand, 506564 - 505829
Alignment:
| Q |
1 |
aaacaacaatacaaaaacatcagggtgccgtatacaggcgaaacaccccaatcaattaaaccaccaaaaaccagaaaaaagggggcgcacatattaataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
506564 |
aaacaacaatacaaaaacatcagggtgccgtatataggcgaaacaccccaatcaaataaaccaccaaaaaccagaaaaaagggggcgcacatattaataa |
506465 |
T |
|
| Q |
101 |
gtgaaattgaacattctgnnnnnnnnnnatgcaacatcctgcttgttagttgcaataccatagacaaatatgataaaccaattatcctaactaagtttta |
200 |
Q |
| |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| |
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| T |
506464 |
ttgaaattgaacattct-atttttgtttatgcgacatcctgcttgttagttgcaataccatagacaaatgtggtaaaccaattatcctaactaactttta |
506366 |
T |
|
| Q |
201 |
tgtttgcatttgcagttcaataattgaacaatttgctagcacagtttccaaccttgcacaaatattagctaatatcctagcagagaaattgggtcaccaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
506365 |
tgtttgcatttgcagttcaataattgaacaatttgctaccacagtttccaaccttgcacaaatattagctaatatcctagcagagaaattgggtcaccaa |
506266 |
T |
|
| Q |
301 |
tcatctttctttaaggagaattgcttgcccaacacatgttatcttagattgaacagatatcctccatgtcccattgattttaggattcatggcctaatgc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
506265 |
tcatctttctttaaggagaattgcttgcccaacacatgttatcttagattgaacagatatcctccatgtcccattgattttaggattcatggcctaatgc |
506166 |
T |
|
| Q |
401 |
cacatactgatagtgacttccttaccatattatatcaagatcaagttggaggtttacaattggtgaaagatggaaaatgggtcgctgttaaaccaaaccc |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
506165 |
cacatactgatagtgacttccttaccatattatatcaagatcaagttggaggtttacaattggtgaaagatggaaaatgggtcgctgttaaaccaaaccc |
506066 |
T |
|
| Q |
501 |
tgatgcacttataattaacattggagacttatttcaggtactcaaatacatatataaattatttgacttttcttttttagggaataaattatttgacttc |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
506065 |
tgatgcacttataattaacattggagacttatttcaggtactcaaatacatatataatttatttgacttttcttttttagggaataaattatttgactta |
505966 |
T |
|
| Q |
601 |
aattcagatttgaatttagattcctctattttgcttcatttaatacatttactattttgattttaaatccattatcttagttcgtagttttttaaatggt |
700 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
505965 |
aattcagttttgaatttagattcctctattttgcttca---------tttactattttgattttaaatccactatcttagttcgtagttttttaaatggt |
505875 |
T |
|
| Q |
701 |
cgactttttccacacattttaagattgagttttgatgaggtgacaa |
746 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
505874 |
cgactttttccatacattttaagattgagttttgatgaggtgacaa |
505829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 1e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 209 - 542
Target Start/End: Complemental strand, 16703181 - 16702848
Alignment:
| Q |
209 |
tttgcagttcaataattgaacaatttgctagcacagtttccaaccttgcacaaatattagctaatatcctagcagagaaattgggtcaccaatcatcttt |
308 |
Q |
| |
|
||||||| |||| ||||||||||||||||| || | |||||||||||||||| |||||| |||| ||||| || ||| |||| || ||||| ||| |
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| T |
16703181 |
tttgcagatcaacaattgaacaatttgctatcatatcatccaaccttgcacaaactttagctcatattctagctgaaaaaatggggcatgaatcaactta |
16703082 |
T |
|
| Q |
309 |
ctttaaggagaattgcttgcccaacacatgttatcttagattgaacagatatcctccatgtcccattgattttaggattcatggcctaatgccacatact |
408 |
Q |
| |
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||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| || | || | ||||||||| ||||||||||| ||| |
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| T |
16703081 |
ttttaaggagaattgcttgcccaatacttgttatcttcgattgaacagatatcctccatgtcctatagcttctgagattcatggtctaatgccacacact |
16702982 |
T |
|
| Q |
409 |
gatagtgacttccttaccatattatatcaagatcaagttggaggtttacaattggtgaaagatggaaaatgggtcgctgttaaaccaaaccctgatgcac |
508 |
Q |
| |
|
|||||||||||||| || ||||| |||||||||||||| ||||| || |||||||||||||| |||||| | || ||||||||||| ||| ||| | |
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| T |
16702981 |
gatagtgacttcctaactatattgtatcaagatcaagtaggaggattgcaattggtgaaagacaagaaatggattgcagttaaaccaaatcctagtgctc |
16702882 |
T |
|
| Q |
509 |
ttataattaacattggagacttatttcaggtact |
542 |
Q |
| |
|
||||||| ||||| || |||||||| |||||||| |
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| T |
16702881 |
ttataatcaacataggtgacttattccaggtact |
16702848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 209 - 542
Target Start/End: Complemental strand, 17677417 - 17677084
Alignment:
| Q |
209 |
tttgcagttcaataattgaacaatttgctagcacagtttccaaccttgcacaaatattagctaatatcctagcagagaaattgggtcaccaatcatcttt |
308 |
Q |
| |
|
||||||| |||| ||||||||||||||||| || | |||||||||||||||| |||||| |||| ||||| || ||| |||| || ||||| ||| |
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|
| T |
17677417 |
tttgcagatcaacaattgaacaatttgctatcatatcatccaaccttgcacaaactttagctcatattctagctgaaaaaatggggcatgaatcaactta |
17677318 |
T |
|
| Q |
309 |
ctttaaggagaattgcttgcccaacacatgttatcttagattgaacagatatcctccatgtcccattgattttaggattcatggcctaatgccacatact |
408 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| || | || | ||||||||| ||||||||||| ||| |
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|
| T |
17677317 |
ttttaaggagaattgcttgcccaatacttgttatcttcgattgaacagatatcctccatgtcctatagcttctgagattcatggtctaatgccacacact |
17677218 |
T |
|
| Q |
409 |
gatagtgacttccttaccatattatatcaagatcaagttggaggtttacaattggtgaaagatggaaaatgggtcgctgttaaaccaaaccctgatgcac |
508 |
Q |
| |
|
|||||||||||||| || ||||| |||||||||||||| ||||| || |||||||||||||| |||||| | || ||||||||||| ||| ||| | |
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|
| T |
17677217 |
gatagtgacttcctaactatattgtatcaagatcaagtaggaggattgcaattggtgaaagacaagaaatggattgcagttaaaccaaatcctagtgctc |
17677118 |
T |
|
| Q |
509 |
ttataattaacattggagacttatttcaggtact |
542 |
Q |
| |
|
||||||| ||||| || |||||||| |||||||| |
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|
| T |
17677117 |
ttataatcaacataggtgacttattccaggtact |
17677084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 3595157 - 3595067
Alignment:
| Q |
1 |
aaacaacaatacaaaaacat-cagggtgccgtatacaggcgaaacaccccaatcaattaaaccaccaaaaaccagaaaaaagggggcgcaca |
91 |
Q |
| |
|
||||||||||| ||||||| ||||||||| | || ||||| ||||||||| | || ||||||||||||||||||||||| |||| ||||| |
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|
| T |
3595157 |
aaacaacaatataaaaacaaacagggtgccttctataggcggcacaccccaa-ctataaaaccaccaaaaaccagaaaaaatggggggcaca |
3595067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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