View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16964_low_10 (Length: 274)

Name: NF16964_low_10
Description: NF16964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16964_low_10
NF16964_low_10
[»] chr2 (7 HSPs)
chr2 (1-260)||(821341-821600)
chr2 (6-198)||(973652-973844)
chr2 (4-209)||(410488-410693)
chr2 (1-111)||(957809-957919)
chr2 (6-119)||(965166-965279)
chr2 (1-123)||(1400023-1400142)
chr2 (1-123)||(1403741-1403863)
[»] chr3 (1 HSPs)
chr3 (1-256)||(45810067-45810321)
[»] chr7 (2 HSPs)
chr7 (1-204)||(12105515-12105718)
chr7 (1-216)||(28449405-28449617)
[»] chr6 (1 HSPs)
chr6 (1-230)||(10116363-10116588)
[»] chr1 (2 HSPs)
chr1 (64-211)||(48675085-48675232)
chr1 (81-230)||(22068491-22068639)
[»] chr5 (2 HSPs)
chr5 (65-125)||(36199394-36199454)
chr5 (187-230)||(36199516-36199560)


Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 821341 - 821600
Alignment:
Q  1 tcattaaaccttacaacttgcactatgcgtgactttgcacttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagag 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  821341 tcattaaaccttacaacttgcactatgcgggactttgcacttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagag 821440  T
Q  101 ttttagaaactatgacaatctggagcaacaataaacaatttgaaatagaaagtcgattatctccatgcccaagggcttctgcaacatgtcaactttcatt 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  821441 ttttagaaactatgacaatctggagcaacaataaacaatctgaaatagaaagtcgattatctccatgcccaagggcttctgcaacatgtcaactttcatt 821540  T
Q  201 ttattgataacatatatgattatgtaagtattattgttcctattctctcttttgttccat 260  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||    
T  821541 ttattgataacatatacgattatgtaagtattatttttcctattctctcatttgttccat 821600  T

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Target: chr2; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 6 - 198
Target Start/End: Complemental strand, 973844 - 973652
Alignment:
Q  6 aaaccttacaacttgcactatgcgtgactttgcacttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagagtttta 105  Q
    |||||||||||||||||||||| | |||||||||  ||||||||||||| ||||||||||||||||||||| |||||||||| |||| || |||||||||    
T  973844 aaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgttagcaagatttattctggagaacgcaagagtttta 973745  T
Q  106 gaaactatgacaatctggagcaacaataaacaatttgaaatagaaagtcgattatctccatgcccaagggcttctgcaacatgtcaactttca 198  Q
     ||||||||| |||||||||||||| ||||| || ||| |||||||||| ||||||||||||||||| |||||||||||||||||| ||||||    
T  973744 caaactatgaaaatctggagcaacagtaaacgatctgatatagaaagtcaattatctccatgcccaaaggcttctgcaacatgtcagctttca 973652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 209
Target Start/End: Original strand, 410488 - 410693
Alignment:
Q  4 ttaaaccttacaacttgcactatgcgtgactttgcacttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagagttt 103  Q
    ||||||||||||||||||||||| || ||||| ||| ||||||||| ||||  |  ||||||||||||||||| ||||||||| |||||||| |||||||    
T  410488 ttaaaccttacaacttgcactattcgggacttcgcatttgcaggcctacaacattgtcacattatgttagcaaaatttattctaaagaatgcaagagttt 410587  T
Q  104 tagaaactatgacaatctggagcaacaataaacaatttgaaatagaaagtcgattatctccatgcccaagggcttctgcaacatgtcaactttcatttta 203  Q
    ||  ||||||||| |||| | ||||||| ||||| | | || ||||||| | ||||||  |||| |||||||||||| ||||||||||||||||| ||||    
T  410588 tacgaactatgactatcttgtgcaacaagaaacagtctaaagtagaaagactattatcctcatgtccaagggcttctacaacatgtcaactttcaattta 410687  T
Q  204 ttgata 209  Q
    ||||||    
T  410688 ttgata 410693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 957919 - 957809
Alignment:
Q  1 tcattaaaccttacaacttgcactatgcgtgactttgcacttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagag 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||  |||| |||||| ||||||||||||||||||||||||    
T  957919 tcattaaaccttacaacttgcactatgcgggactttgcacttgcaggccaacaaagtaatcatcttattttagcattatttattctgaagaatgcgagag 957820  T
Q  101 ttttagaaact 111  Q
    |||||||||||    
T  957819 ttttagaaact 957809  T

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Target: chr2; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 6 - 119
Target Start/End: Complemental strand, 965279 - 965166
Alignment:
Q  6 aaaccttacaacttgcactatgcgtgactttgcacttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagagtttta 105  Q
    |||||||||||||||||||||| | |||||||||  ||||||||||||| |||||||||||||| |||||| |||||||||| ||||||| |||||||||    
T  965279 aaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgctagcaagatttattctggagaatgcaagagtttta 965180  T
Q  106 gaaactatgacaat 119  Q
    ||||||||| ||||    
T  965179 gaaactatgtcaat 965166  T

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Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 1400023 - 1400142
Alignment:
Q  1 tcattaaaccttacaacttgcactatgcgtgactttgcacttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagag 100  Q
    |||||||||||||||||||||| |||||| |||||||    || |||||||||| |||||| ||||||||||||||  ||||||||| ||||||| ||||    
T  1400023 tcattaaaccttacaacttgcaatatgcgggactttga---tgaaggccaacaacgtaatcgcattatgttagcaaggtttattctgcagaatgcaagag 1400119  T
Q  101 ttttagaaactatgacaatctgg 123  Q
    |||||||||||||| ||||||||    
T  1400120 ttttagaaactatgccaatctgg 1400142  T

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Target: chr2; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 1403741 - 1403863
Alignment:
Q  1 tcattaaaccttacaacttgcactatgcgtgactttgcacttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagag 100  Q
    |||||||||||||||||||||| |||||| |||||||   ||| || ||||||  |||||| ||||||||||||||  ||||||||| | ||||| ||||    
T  1403741 tcattaaaccttacaacttgcaatatgcgggactttgttgttgtagaccaacaccgtaatcgcattatgttagcaaggtttattctggataatgcaagag 1403840  T
Q  101 ttttagaaactatgacaatctgg 123  Q
    |||||||||||||| ||||||||    
T  1403841 ttttagaaactatgtcaatctgg 1403863  T

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Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 45810321 - 45810067
Alignment:
Q  1 tcattaaaccttacaacttgcactatgcgtgactttgcacttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagag 100  Q
    ||||||||||| || |||||||||||||| ||||||||| ||||||||  |||| |||||||  ||||||||||||  ||||||||||||||||| | ||    
T  45810321 tcattaaacctcacgacttgcactatgcgggactttgcatttgcaggcttacaacgtaatcatgttatgttagcaaggtttattctgaagaatgcaaaag 45810222  T
Q  101 ttttagaaactatgacaatctggagcaacaataaacaatttgaaatagaaagtcgattatctccatgcccaagggcttctgcaacatgtcaactttcatt 200  Q
    ||||||||||||||||||| ||| ||| ||  ||||  | | |||||||||  | ||||||| |||| |||||||||||||||| ||||||||||||| |    
T  45810221 ttttagaaactatgacaatttggtgcagcagaaaacggtctaaaatagaaaaactattatcttcatgtccaagggcttctgcaaaatgtcaactttcaat 45810122  T
Q  201 ttattgataacatatatgattatgtaagtattattgttcctattctctcttttgtt 256  Q
    ||||||||||||||||||| |||||||||| |||| |  |||||||||| ||||||    
T  45810121 ttattgataacatatatga-tatgtaagtagtattttctctattctctcctttgtt 45810067  T

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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 12105515 - 12105718
Alignment:
Q  1 tcattaaaccttacaacttgcactatgcgtgactttgcacttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagag 100  Q
    |||| |||||||| |||||| || || |||||||||||| ||| ||||| |||  || |||||||||||||||||| |||||||||||||||| | | ||    
T  12105515 tcatcaaaccttagaacttgtacgatccgtgactttgcaattggaggcctacagagttatcacattatgttagcaaaatttattctgaagaattcaacag 12105614  T
Q  101 ttttagaaactatgacaatctggagcaacaataaacaatttgaaatagaaagtcgattatctccatgcccaagggcttctgcaacatgtcaactttcatt 200  Q
    ||||||||| |||| |||||||| ||  |   ||||| | |||||||||||| |||||| |  | ||  |||| |||||||||||||||||||||||| |    
T  12105615 ttttagaaaatatgtcaatctggtgcttcgggaaacagtctgaaatagaaagacgattaacctcgtgttcaagagcttctgcaacatgtcaactttcaat 12105714  T
Q  201 ttat 204  Q
    ||||    
T  12105715 ttat 12105718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 28449617 - 28449405
Alignment:
Q  1 tcattaaaccttacaacttgcactatgcgtgactttgcacttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagag 100  Q
    |||||| | ||||||||||||||||| || ||||||||| ||| || || ||||   ||| |||||||| |||||| || |||||| || ||||| ||||    
T  28449617 tcattacatcttacaacttgcactattcgggactttgcatttgtagacctacaa---aatgacattatgctagcaagatatattcttaataatgcaagag 28449521  T
Q  101 ttttagaaactatgacaatctggagcaacaataaacaatttgaaatagaaagtcgattatctccatgcccaagggcttctgcaacatgtcaactttcatt 200  Q
    ||||| |||| ||||  || |||||  | ||  |||||  | ||||||||||   ||||||  |||| |||||||| ||  |||| |||||||||||| |    
T  28449520 ttttacaaaccatgatgatatggagtgataaagaacaacctcaaatagaaagggaattatcctcatgtccaagggcatccacaacttgtcaactttcagt 28449421  T
Q  201 ttattgataacatata 216  Q
    ||||||||||| ||||    
T  28449420 ttattgataacgtata 28449405  T

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Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 10116588 - 10116363
Alignment:
Q  1 tcattaaaccttacaacttgcactatgcgtgactttgcacttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagag 100  Q
    |||| ||||||||||||||| |||||||| || |||| | || |||||| ||| ||| ||||||||||| |||| |  ||||||||  ||||||||||||    
T  10116588 tcatcaaaccttacaacttgtactatgcgggaatttgaattttcaggcctacagtgttatcacattatgctagctaggtttattcttgagaatgcgagag 10116489  T
Q  101 ttttagaaactatgacaatctggagcaacaataaacaatttgaaatagaaagtcgattatctccatgcccaagggcttctgcaacatgtcaactttcatt 200  Q
    |||||||||||||| |||||||| |   |   ||||  | | ||||||||||    |||||  |||| |||||||||||| |||||||| ||||||||      
T  10116488 ttttagaaactatgtcaatctggtgttgcgggaaacggtctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactttca-- 10116391  T
Q  201 ttattgataacatatatgattatgtaagta 230  Q
      ||| | ||||||||||||||||||||||    
T  10116390 --attaaaaacatatatgattatgtaagta 10116363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 211
Target Start/End: Complemental strand, 48675232 - 48675085
Alignment:
Q  64 attatgttagcaatatttattctgaagaatgcgagagttttagaaactatgacaatctggagcaacaataaacaatttgaaatagaaagtcgattatctc 163  Q
    ||||||||||||| || |||||| || ||||| | ||||||| ||||||||||||| |||||| ||||  | |||  | ||||||||||   ||||||      
T  48675232 attatgttagcaagatatattctaaataatgcaaaagttttacaaactatgacaatatggagcgacaaggaccaacctcaaatagaaagggaattatcct 48675133  T
Q  164 catgcccaagggcttctgcaacatgtcaactttcattttattgataac 211  Q
    |||| |||||||| ||||||||||||||||||||| ||||||||||||    
T  48675132 catgtccaagggcctctgcaacatgtcaactttcagtttattgataac 48675085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 230
Target Start/End: Original strand, 22068491 - 22068639
Alignment:
Q  81 tattctgaagaatgcgagagttttagaaactatgacaatctggagcaacaataaacaatttgaaatagaaagtcgattatctccatgcccaagggcttct 180  Q
    |||| |||||||| |||||  ||||||||  |||| ||| |||||||  | | |||||  ||||||||||||   ||| ||| ||||||||| |||||||    
T  22068491 tattttgaagaattcgagaaatttagaaatcatgataatttggagcagaagtgaacaacctgaaatagaaagaaaattgtctgcatgcccaaaggcttct 22068590  T
Q  181 gcaacatgtcaactttcattttattgataacatatatgattatgtaagta 230  Q
     |||||||| |||||| | |||| ||||| ||| || || ||||||||||    
T  22068591 acaacatgtgaacttttagtttagtgatagcattta-gactatgtaagta 22068639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 36199394 - 36199454
Alignment:
Q  65 ttatgttagcaatatttattctgaagaatgcgagagttttagaaactatgacaatctggag 125  Q
    |||||||||||| || |||||| || ||||| ||||||||| ||||||||||||| |||||    
T  36199394 ttatgttagcaagatatattctaaataatgcaagagttttacaaactatgacaatatggag 36199454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 36199516 - 36199560
Alignment:
Q  187 tgtcaactttcattttattgataacatatatgat-tatgtaagta 230  Q
    |||||||||||| ||||||||||||||||| ||| ||||||||||    
T  36199516 tgtcaactttcagtttattgataacatataagatatatgtaagta 36199560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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