View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16964_low_4 (Length: 523)
Name: NF16964_low_4
Description: NF16964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16964_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Original strand, 30852034 - 30852444
Alignment:
| Q |
19 |
gtcattgggaaggtgaatgctaaaactcaagatgcttttttaaaagggtgggggtggagtcggagaagaagtctatgtgttttgaatgttgagtttctag |
118 |
Q |
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| T |
30852034 |
gtcattgggaaggtgaatgctaaaactcaagatgcttttttaaaagggtgggggtggaatcggagaagaagtatacgtgttttgaatgttgagtttctag |
30852133 |
T |
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| Q |
119 |
taaattattttcgaatatattgttttagttaggattatattgtgcagtgacaaacaataatttttgtcacatggttcaatttaaaggttttgaaggaata |
218 |
Q |
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| T |
30852134 |
taaattattttcgaatatattgttttagttaggattatattgtgcagtgacaaacaataatttttgtcatatggttcaatttaaaggctttgaaggaata |
30852233 |
T |
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| Q |
219 |
aattcatttgatttagttgacttgtgtatgaactatttggaagcatcgaaatttgatgatctttggttgacatactttaacgggttcattgattgacttg |
318 |
Q |
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| T |
30852234 |
gattcatttgatttagttgacttgtgtatgaactatttggaagcatcgaaatttggtgatctttgggtgacatactttaatgggttcattgattgacttg |
30852333 |
T |
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| Q |
319 |
gtgaagctattggtctagtaatggatcaaaccaaaggaaagggcttcaaatatgatttttatcgatcatatattcaaccactcaaaatgtttagatgtga |
418 |
Q |
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| T |
30852334 |
gtgaagctattggtctagtaatggatcaaaccaaaggaaagggcttcaaatatgatttttatcaatcatatattcaaccattcaaaatgtttagatgtga |
30852433 |
T |
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| Q |
419 |
tattatttatc |
429 |
Q |
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| T |
30852434 |
tattatttatc |
30852444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 523
Target Start/End: Original strand, 30852509 - 30852538
Alignment:
| Q |
494 |
aacttcacctttaaaaagaagacaaaaaac |
523 |
Q |
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| T |
30852509 |
aacttcacctttaaaaagaagacaaaaaac |
30852538 |
T |
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