View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16964_low_5 (Length: 442)
Name: NF16964_low_5
Description: NF16964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16964_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 14 - 425
Target Start/End: Original strand, 27422603 - 27423016
Alignment:
| Q |
14 |
atacatctcagatttttgtgcaacttgttaggcttgtgttggaacagtgtgaggaggagc--agagaaccgatattgaacacaagaacatgagccactat |
111 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27422603 |
atacatctcagatttgtgtgcaacttgttaggcttgtgttggaacagtgtgaggaggagagaagagaaccgatattgaacacaagaacatgagccactat |
27422702 |
T |
|
| Q |
112 |
gaaccacattttatatttttgcatgacagactccacaaaatttgcataccagaacaaaactttgcggtccctgccatcctaatcaaatatgaaggtcaat |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27422703 |
gaaccacattttatatttttgcatgacagactccacaaaatttgcataccagaacaaaactttgcgatccctgccatcctaatcaaatatgaaggtcaat |
27422802 |
T |
|
| Q |
212 |
taaactttctcttccatgcatatgtctattgaatggtagagtaggcctctaagacaataccatgtgatcttatattttctcttgtctccttgtagtttct |
311 |
Q |
| |
|
|||||||||| ||||||| ||| |||| || ||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||| |
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| T |
27422803 |
taaactttctattccatgaataggtctgttttatggtagggtaggcctctaagacaataccatgtgatcttatatatgctcttgtctccttgtagattcc |
27422902 |
T |
|
| Q |
312 |
atgactccatcctaatcctatactacagtatatacttccactaataattcaagtagccaatggtttctcaaaattcttttatctatataaattttaaagg |
411 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27422903 |
atgactccatcctgatcctatactacagtatatacttccactaataattcaagtagccaatggtttctcaaaattcttttatctatataaattttatagg |
27423002 |
T |
|
| Q |
412 |
ttagaaccatttag |
425 |
Q |
| |
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|||||||||||||| |
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|
| T |
27423003 |
ttagaaccatttag |
27423016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 400
Target Start/End: Original strand, 27412058 - 27412444
Alignment:
| Q |
16 |
acatctcagatttttgtgcaacttgttaggcttgtgttggaacagtgtgaggagga--gcagagaaccgatattgaacacaagaacatgagccactatga |
113 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||| |||||| |||||||||||| | || ||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
27412058 |
acatcttagatttatgtgcaacttgttaggcttgtgatggaacggtgtgaggaggaaagaagcgaaccgatattgaacacaagaacttgagctactatga |
27412157 |
T |
|
| Q |
114 |
accacattttatatttttgcatgacagactccacaaaatttgcataccagaacaaaactttgcggtccctgccatcctaatcaaatatgaaggtcaatta |
213 |
Q |
| |
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|||| ||||| |||||||| | ||| |||||| | ||||||||||||| ||| ||||||| ||||| ||| ||||||| || ||| ||||||||||| |
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| T |
27412158 |
accaaattttttatttttgtaagaccaactccatgatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaatta |
27412257 |
T |
|
| Q |
214 |
aactttctcttccatgcatatgtctattgaatggtagagtaggcctctaagacaataccatgtgatcttatattttctcttgtctccttgtagtttctat |
313 |
Q |
| |
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|||||||| ||||||| ||| |||| || ||||||| |||| |||||||||||||||||||||||||||||| | ||||||||||||||||| ||| || |
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| T |
27412258 |
aactttctattccatgaataggtctgttttatggtagggtagacctctaagacaataccatgtgatcttatatatgctcttgtctccttgtagattccat |
27412357 |
T |
|
| Q |
314 |
gactccatcctaatcctatactacagtatatacttccactaataattcaagtagccaatggtttctcaaaattcttttatctatata |
400 |
Q |
| |
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||||||||||| |||||||||||||||||| || ||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
27412358 |
gactccatcctgatcctatactacagtataaacctccaccaatcattcaagtagccaatggtttctcaatattcttttatctatata |
27412444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 86 - 400
Target Start/End: Complemental strand, 27570736 - 27570418
Alignment:
| Q |
86 |
ttgaacacaagaacatgagccactatgaaccacattttat---atttttgcatgacagactccacaaaatttgcataccagaacaaaactttgcggtccc |
182 |
Q |
| |
|
|||||| |||| |||||| || ||| ||||||||||||| ||||||||| ||| |||||| | ||||||||||||| ||| ||||||| ||||| |
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| T |
27570736 |
ttgaacgcaagttcatgagacattataaaccacattttattttatttttgcaagaccaactccatgatatttgcataccaggacagaactttgaggtcct |
27570637 |
T |
|
| Q |
183 |
tgccatcctaatcaaatatgaaggtcaattaaactttctcttccatgcatatgtctattgaatggtagagtaggcctctaagacaataccatgtgatctt |
282 |
Q |
| |
|
||| ||||||| || ||| ||||||||||||||||||| ||||||| ||| |||| || ||||||| |||| |||||||||||||||||||||||||| |
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|
| T |
27570636 |
tgcattcctaattaagtatcaaggtcaattaaactttctattccatgaataggtctgttttatggtagggtagacctctaagacaataccatgtgatctt |
27570537 |
T |
|
| Q |
283 |
atattttctcttgtctccttgtagtttctatgactccatcctaatcctatactacagtatatacttccactaataattcaagtagccaatggtttctcaa |
382 |
Q |
| |
|
|||| | ||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| |
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| T |
27570536 |
atatatgctcttgtctccttgtagattccatgactccatcctgatcctatactacagtatatacctccaccaatcattcaagtagccaatggtttctcaa |
27570437 |
T |
|
| Q |
383 |
-aattcttttatctatata |
400 |
Q |
| |
|
||||||||| ||||||| |
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|
| T |
27570436 |
ttattcttttaactatata |
27570418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 56 - 221
Target Start/End: Original strand, 27415010 - 27415176
Alignment:
| Q |
56 |
aacagtgtgaggaggagca-gagaaccgatattgaacacaagaacatgagccactatgaaccacattttatatttttgcatgacagactccacaaaattt |
154 |
Q |
| |
|
|||||||||||||||| | ||||||| || |||||||||||| |||| ||| ||||||||||||||||||||| || || |||| || || | |||| |
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|
| T |
27415010 |
aacagtgtgaggaggaaaaagagaaccaattttgaacacaagatcatgggcctctatgaaccacattttatattattacaagacaagcttcatgatattt |
27415109 |
T |
|
| Q |
155 |
gcataccagaacaaaactttgcggtccctgccatcctaatcaaatatgaaggtcaattaaactttct |
221 |
Q |
| |
|
||||||||| ||| || |||||||||| |||| || |||| || ||| ||||||||||||||||||| |
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|
| T |
27415110 |
gcataccaggacagaagtttgcggtccttgccttcttaattaagtatcaaggtcaattaaactttct |
27415176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 83 - 224
Target Start/End: Original strand, 27425282 - 27425423
Alignment:
| Q |
83 |
atattgaacacaagaacatgagccactatgaaccacattttatatttttgcatgacagactccacaaaatttgcataccagaacaaaactttgcggtccc |
182 |
Q |
| |
|
||||||||||||||| || | |||| | |||||||| ||||||||||||| |||| |||||| | ||||||||||| |||| |||||||||||||| |
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|
| T |
27425282 |
atattgaacacaagatcacaaaccaccaggaaccacaatttatatttttgccagacaaactccatgatatttgcatacctgaacggaactttgcggtccc |
27425381 |
T |
|
| Q |
183 |
tgccatcctaatcaaatatgaaggtcaattaaactttctctt |
224 |
Q |
| |
|
|||| | |||| || || ||||| |||||||||||||||| |
|
|
| T |
27425382 |
tgccttgctaaataagtaacaaggttaattaaactttctctt |
27425423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 74 - 224
Target Start/End: Complemental strand, 27566630 - 27566478
Alignment:
| Q |
74 |
agagaaccgatattgaacacaagaacatgagccactatgaaccacattttatat--ttttgcatgacagactccacaaaatttgcataccagaacaaaac |
171 |
Q |
| |
|
|||||||| |||| |||||||||| || | ||||||| ||||||||||||||| |||| || |||| | |||| |||||||||||||| |||| ||| |
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|
| T |
27566630 |
agagaaccaatatagaacacaagatcacaaaccactataaaccacattttatatagtttttcaggacaaattccattaaatttgcataccataacagaac |
27566531 |
T |
|
| Q |
172 |
tttgcggtccctgccatcctaatcaaatatgaaggtcaattaaactttctctt |
224 |
Q |
| |
|
|||||||||||||| | |||| || || | |||||||||||||||||||| |
|
|
| T |
27566530 |
tttgcggtccctgcattgctaaataagtaacatggtcaattaaactttctctt |
27566478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 27415245 - 27415319
Alignment:
| Q |
262 |
aagacaataccatgtgatcttatattttctcttgtctccttgtagtttctatgactccatcctaatcctatacta |
336 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||| ||||| |||| || | ||| ||||||||||||||| |
|
|
| T |
27415245 |
aagacaataccatgtgatcttatatatcctcttgtctctttgtatattctttgtccccaacctaatcctatacta |
27415319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 27419893 - 27419963
Alignment:
| Q |
151 |
atttgcataccagaacaaaactttgcggtccctgccatcctaatcaaatatgaaggtcaattaaactttct |
221 |
Q |
| |
|
|||||| |||||||||| ||||| |||||||||||| || |||| || ||| ||||||||||||||||||| |
|
|
| T |
27419893 |
atttgcttaccagaacagaacttcgcggtccctgccttcttaattaagtatcaaggtcaattaaactttct |
27419963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 27564095 - 27564028
Alignment:
| Q |
99 |
catgagccactatgaaccacattttatatttttgcatgacagactccacaaaatttgcataccagaac |
166 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||| || ||| ||||| ||| |||||||| |
|
|
| T |
27564095 |
catgagccattatgaaccacattttatatttttgcaagacaaaccccatgaaattcgcacaccagaac |
27564028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 27420021 - 27420078
Alignment:
| Q |
259 |
tctaagacaataccatgtgatcttatattttctcttgtctccttgtagtttctatgac |
316 |
Q |
| |
|
|||||||||| ||||||||||||||||| | |||||| |||||||||| |||| |||| |
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|
| T |
27420021 |
tctaagacaacaccatgtgatcttatatatgctcttgcctccttgtagattctttgac |
27420078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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