View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16964_low_6 (Length: 388)

Name: NF16964_low_6
Description: NF16964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16964_low_6
NF16964_low_6
[»] chr2 (13 HSPs)
chr2 (16-388)||(820866-821238)
chr2 (228-385)||(410184-410341)
chr2 (251-353)||(982091-982193)
chr2 (268-375)||(965454-965561)
chr2 (228-385)||(1403192-1403349)
chr2 (263-359)||(974016-974112)
chr2 (17-75)||(965765-965823)
chr2 (228-336)||(1399487-1399595)
chr2 (19-73)||(975036-975090)
chr2 (297-382)||(824884-824966)
chr2 (242-346)||(989773-989877)
chr2 (296-347)||(963578-963629)
chr2 (345-388)||(1024889-1024932)
[»] chr6 (1 HSPs)
chr6 (245-364)||(10116747-10116866)
[»] chr3 (1 HSPs)
chr3 (227-382)||(45810468-45810623)
[»] chr7 (5 HSPs)
chr7 (235-375)||(1445999-1446139)
chr7 (234-376)||(12105209-12105351)
chr7 (297-375)||(1459312-1459390)
chr7 (303-347)||(1333502-1333546)
chr7 (303-347)||(28449797-28449841)
[»] chr1 (1 HSPs)
chr1 (298-347)||(48675483-48675532)
[»] chr5 (1 HSPs)
chr5 (296-347)||(36199113-36199164)


Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 388
Target Start/End: Original strand, 820866 - 821238
Alignment:
Q  16 attttgatgactttgaaagcagctcaatgttaagaaagttgaacagagcagatattaccgcttgtaattggtatttctacgcatacaactatccaaggtt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  820866 attttgatgactttgaaagcagctcaatgttaagaaagttgaacagagcagatattaccgcttgtaattggtatttctacgcatacaactatccaaggtt 820965  T
Q  116 tgttttattttcggatggagtgaatnnnnnnnncaaagtgattcatttgtannnnnnnattttgtacctaatactttatctttttatataaactagattt 215  Q
    |||||||||||||||||||||||||        ||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  820966 tgttttattttcggatggagtgaataaaaaaaacaaagtgattcatttgtatttttttattttgtacctaatactttatctttttatataaactagattt 821065  T
Q  216 atcgctattattatgactttcctacatttcataatttgacccatttggtgcacaactatgattggaatatagttgtacgggtgctccaccattgccctaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  821066 atcgctattattatgactttcctacatttcataatttgacccatttggtgcacaactatgattggaatatagttgtatgggtgctccaccattgccctaa 821165  T
Q  316 acttcaaaatcttgaactttatcaggtttgtttgttaagtttaagaatcctatttgatttatcttttcttaac 388  Q
     ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  821166 gcttcaaaatcttgaactttatcaggtttgcttgttaagtttaagaatcctatttgatttatcttttcttaac 821238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 228 - 385
Target Start/End: Original strand, 410184 - 410341
Alignment:
Q  228 atgactttcctacatttcataatttgacccatttggtgcacaactatgattggaatatagttgtacgggtgctccaccattgccctaaacttcaaaatct 327  Q
    ||||||| |||||||| |||||||||| ||||||||||  |||||| ||  || ||||||||||||  |||||||||||||||||||| |||||||||||    
T  410184 atgacttccctacattccataatttgatccatttggtgatcaactacgacggggatatagttgtacaagtgctccaccattgccctaagcttcaaaatct 410283  T
Q  328 tgaactttatcaggtttgtttgttaagtttaagaatcctatttgatttatcttttctt 385  Q
    ||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||    
T  410284 tgaactttatcgggtttgtttgttaaatttaagaatcatatttgatttatcttttctt 410341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 251 - 353
Target Start/End: Complemental strand, 982193 - 982091
Alignment:
Q  251 ttgacccatttggtgcacaactatgattggaatatagttgtacgggtgctccaccattgccctaaacttcaaaatcttgaactttatcaggtttgtttgt 350  Q
    ||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||||| |||||||||||||||||||    
T  982193 ttgactcatttggtgctcaactatgattggaatatagttgtacgagtgctccaccattgctttaagcttcaaaatcttgacctttatcaggtttgtttgt 982094  T
Q  351 taa 353  Q
    |||    
T  982093 taa 982091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 268 - 375
Target Start/End: Complemental strand, 965561 - 965454
Alignment:
Q  268 caactatgattggaatatagttgtacgggtgctccaccattgccctaaacttcaaaatcttgaactttatcaggtttgtttgttaagtttaagaatccta 367  Q
    ||||||||||||| |||||||||| |  |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||| ||    
T  965561 caactatgattgggatatagttgttcaagtgctccatcattgccctaagcttcaaaatcttgaactttatcaggtttgtttgttaaatttaacaatcata 965462  T
Q  368 tttgattt 375  Q
    || |||||    
T  965461 ttcgattt 965454  T

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Target: chr2; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 228 - 385
Target Start/End: Original strand, 1403192 - 1403349
Alignment:
Q  228 atgactttcctacatttcataatttgacccatttggtgcacaactatgattggaatatagttgtacgggtgctccaccattgccctaaacttcaaaatct 327  Q
    |||||||||||||||| ||||||||||| ||| |||||| ||||||| | ||  ||||| ||||||  |||||| ||||||||||||| |||||||||||    
T  1403192 atgactttcctacattccataatttgactcatctggtgctcaactataactgtgatataattgtacaagtgctctaccattgccctaagcttcaaaatct 1403291  T
Q  328 tgaactttatcaggtttgtttgttaagtttaagaatcctatttgatttatcttttctt 385  Q
    |||  ||||| |||| ||| | |||| | |||||| | ||||||||||||||||||||    
T  1403292 tgacttttatgaggtatgtgtcttaaatataagaaacttatttgatttatcttttctt 1403349  T

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Target: chr2; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 263 - 359
Target Start/End: Complemental strand, 974112 - 974016
Alignment:
Q  263 gtgcacaactatgattggaatatagttgtacgggtgctccaccattgccctaaacttcaaaatcttgaactttatcaggtttgtttgttaagtttaa 359  Q
    |||| ||||||||||||| |||||||||| |  |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||| |||||    
T  974112 gtgctcaactatgattgggatatagttgttcaagtgctccatcattgccctaagcttcaaaatcttgacctttatcaggtttgtttgttaaatttaa 974016  T

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Target: chr2; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 965823 - 965765
Alignment:
Q  17 ttttgatgactttgaaagcagctcaatgttaagaaagttgaacagagcagatattaccg 75  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  965823 ttttgatgactttgaaaacagctcaatgctaagaaagttgaacagagcagatattaccg 965765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 228 - 336
Target Start/End: Original strand, 1399487 - 1399595
Alignment:
Q  228 atgactttcctacatttcataatttgacccatttggtgcacaactatgattggaatatagttgtacgggtgctccaccattgccctaaacttcaaaatct 327  Q
    |||||||| ||||||| ||||||||||| ||| |||||| |||||||   ||  ||||| ||||||  |||||||||||||||||||| |||||||||||    
T  1399487 atgacttttctacattccataatttgactcatctggtgctcaactatagctgtgatataattgtacaagtgctccaccattgccctaagcttcaaaatct 1399586  T
Q  328 tgaacttta 336  Q
    |||| ||||    
T  1399587 tgaatttta 1399595  T

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Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 975090 - 975036
Alignment:
Q  19 ttgatgactttgaaagcagctcaatgttaagaaagttgaacagagcagatattac 73  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  975090 ttgatgactttgaaagcagctcaatgttaaaaaaattgaacagagcagatattac 975036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 297 - 382
Target Start/End: Original strand, 824884 - 824966
Alignment:
Q  297 tgctccaccattgccctaaacttcaaaatcttgaactttatcaggtttgtttgttaagtttaagaatcctatttgatttatctttt 382  Q
    |||||||||| | |||||| ||||| |||||||||||||||| |||||||   ||||||||||||||| |||||| ||||||||||    
T  824884 tgctccaccacttccctaagcttcagaatcttgaactttatcgggtttgt---ttaagtttaagaatcgtatttggtttatctttt 824966  T

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Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 346
Target Start/End: Complemental strand, 989877 - 989773
Alignment:
Q  242 tttcataatttgacccatttggtgcacaactatgattggaatatagttgtacgggtgctccaccattgccctaaacttcaaaatcttgaactttatcagg 341  Q
    ||||||||||||||||| |||| || | || || ||||| || | || ||||  ||||||||||| |||||||| |||||||||||  ||||||||||||    
T  989877 tttcataatttgacccacttggagctctacaataattgggatttggtagtacaagtgctccaccactgccctaagcttcaaaatctccaactttatcagg 989778  T
Q  342 tttgt 346  Q
    |||||    
T  989777 tttgt 989773  T

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Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 347
Target Start/End: Original strand, 963578 - 963629
Alignment:
Q  296 gtgctccaccattgccctaaacttcaaaatcttgaactttatcaggtttgtt 347  Q
    |||||| |||| |||||||||||||||||||| || ||||||||||||||||    
T  963578 gtgctctaccactgccctaaacttcaaaatctcgagctttatcaggtttgtt 963629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 388
Target Start/End: Complemental strand, 1024932 - 1024889
Alignment:
Q  345 gtttgttaagtttaagaatcctatttgatttatcttttcttaac 388  Q
    |||||||||||||||||||| |||||| |||||| |||||||||    
T  1024932 gtttgttaagtttaagaatcatatttggtttatcatttcttaac 1024889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 245 - 364
Target Start/End: Complemental strand, 10116866 - 10116747
Alignment:
Q  245 cataatttgacccatttggtgcacaactatgattggaatatagttgtacgggtgctccaccattgccctaaacttcaaaatcttgaactttatcaggttt 344  Q
    ||||||||||| |||||||||| |  |||||||||| ||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10116866 cataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatcttgaactttatcaggttt 10116767  T
Q  345 gtttgttaagtttaagaatc 364  Q
    ||||||||| ||||| ||||    
T  10116766 gtttgttaaatttaacaatc 10116747  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 227 - 382
Target Start/End: Complemental strand, 45810623 - 45810468
Alignment:
Q  227 tatgactttcctacatttcataatttgacccatttggtgcacaactatgattggaatatagttgtacgggtgctccaccattgccctaaacttcaaaatc 326  Q
    |||||||||||||||||  |||||||||| |||||||||  ||||||||||||| ||||||||||||  ||||| || ||||| ||||| ||||||| ||    
T  45810623 tatgactttcctacattcaataatttgactcatttggtggtcaactatgattgggatatagttgtacaagtgcttcagcattgtcctaagcttcaaagtc 45810524  T
Q  327 ttgaactttatcaggtttgtttgttaagtttaagaatcctatttgatttatctttt 382  Q
    | || |||||||||||||| ||||||| |||||  ||| |||||||||||| ||||    
T  45810523 tcgacctttatcaggtttgcttgttaaatttaacgatcatatttgatttatttttt 45810468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 235 - 375
Target Start/End: Complemental strand, 1446139 - 1445999
Alignment:
Q  235 tcctacatttcataatttgacccatttggtgcacaactatgattggaatatagttgtacgggtgctccaccattgccctaaacttcaaaatcttgaactt 334  Q
    ||||||||| ||||||||||| |||||||||| || |||   ||||  |||||||  ||| |||||| ||| ||||||||| ||||||||| ||||| ||    
T  1446139 tcctacattccataatttgactcatttggtgctcagctacagttggggtatagttcaacgtgtgctctacctttgccctaagcttcaaaatattgaattt 1446040  T
Q  335 tatcaggtttgtttgttaagtttaagaatcctatttgattt 375  Q
    |||||||||||||| |||| ||||| |||| ||||||||||    
T  1446039 tatcaggtttgtttcttaattttaacaatcgtatttgattt 1445999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 234 - 376
Target Start/End: Original strand, 12105209 - 12105351
Alignment:
Q  234 ttcctacatttcataatttgacccatttggtgcacaactatgattggaatatagttgtacgggtgctccaccattgccctaaacttcaaaatcttgaact 333  Q
    |||||||||| ||||||||||| |||||||||| |  |||| ||||| ||||||||  | |  |||| |||| ||| ||||| |||||||||||||| ||    
T  12105209 ttcctacattccataatttgactcatttggtgctctgctataattgggatatagttccaagaatgctgcacctttgtcctaagcttcaaaatcttgacct 12105308  T
Q  334 ttatcaggtttgtttgttaagtttaagaatcctatttgattta 376  Q
    || |||||||||||| |||| ||||| |||| |||||||||||    
T  12105309 ttttcaggtttgtttcttaaatttaacaatcatatttgattta 12105351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 297 - 375
Target Start/End: Complemental strand, 1459390 - 1459312
Alignment:
Q  297 tgctccaccattgccctaaacttcaaaatcttgaactttatcaggtttgtttgttaagtttaagaatcctatttgattt 375  Q
    |||||||| ||||||| || ||||||| |||||||||||||||||||||||| |||| ||||| |||  ||||||||||    
T  1459390 tgctccacgattgccccaagcttcaaactcttgaactttatcaggtttgtttcttaattttaacaattatatttgattt 1459312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 1333546 - 1333502
Alignment:
Q  303 accattgccctaaacttcaaaatcttgaactttatcaggtttgtt 347  Q
    ||||||||||||| |||||||  ||||||||| ||||||||||||    
T  1333546 accattgccctaagcttcaaaggcttgaacttgatcaggtttgtt 1333502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 28449841 - 28449797
Alignment:
Q  303 accattgccctaaacttcaaaatcttgaactttatcaggtttgtt 347  Q
    ||||||| ||||| |||||||| ||||| ||||||||||||||||    
T  28449841 accattgtcctaaccttcaaaagcttgagctttatcaggtttgtt 28449797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 347
Target Start/End: Complemental strand, 48675532 - 48675483
Alignment:
Q  298 gctccaccattgccctaaacttcaaaatcttgaactttatcaggtttgtt 347  Q
    ||||||||| |||||||||||||||||||| || ||||||||||||||||    
T  48675532 gctccaccactgccctaaacttcaaaatctcgagctttatcaggtttgtt 48675483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 347
Target Start/End: Original strand, 36199113 - 36199164
Alignment:
Q  296 gtgctccaccattgccctaaacttcaaaatcttgaactttatcaggtttgtt 347  Q
    ||||| ||||| |||||||||||||||| |||||||||||| ||||||||||    
T  36199113 gtgcttcaccactgccctaaacttcaaattcttgaactttaccaggtttgtt 36199164  T

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