View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16964_low_7 (Length: 379)
Name: NF16964_low_7
Description: NF16964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16964_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 256 - 374
Target Start/End: Complemental strand, 5596227 - 5596109
Alignment:
| Q |
256 |
tttcattgattttaaatacccaaaacctttctcttttccctcctttctgttgaatttaaatacccttttgttgattcttgatcaatcaagcaaaaagttc |
355 |
Q |
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| T |
5596227 |
tttcattgattttaaatacccaaaacctctctcttttccctcctttctgttgaatttaaatacccttttgttgattcttgatcaatcaagcaaaaagttc |
5596128 |
T |
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| Q |
356 |
cctcctttttgttgatttt |
374 |
Q |
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||||||||||||||||||| |
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| T |
5596127 |
cctcctttttgttgatttt |
5596109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 110 - 212
Target Start/End: Complemental strand, 5596378 - 5596271
Alignment:
| Q |
110 |
ttcaaaccatgaaaactttact----aaaccagggtacaaggaaccggg-aacttcactagggcatagggaagcgggaacctgaaagtaaacgatcttat |
204 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
5596378 |
ttcaaaccatgaaaactttacttactaaaccagggtacaaggaaccggggaacttcactagggcatagggaagcgggaacctgaaaatatacgatcttat |
5596279 |
T |
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| Q |
205 |
ccgattat |
212 |
Q |
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|||||||| |
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| T |
5596278 |
ccgattat |
5596271 |
T |
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