View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16965_high_13 (Length: 340)
Name: NF16965_high_13
Description: NF16965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16965_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 15519765 - 15520084
Alignment:
| Q |
1 |
caatatgcagtagagtaggattcccatttgttatggcagcattttttagcttattctctttgtctataatgcgcttagctgctggccagtttccattcag |
100 |
Q |
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| T |
15519765 |
caatatgcagtagagtaggatacccatttgttatggcagcattttttagcttattctctttgtctataatgcgcttagctgctggccagtttccattcag |
15519864 |
T |
|
| Q |
101 |
agcatgcttgtgaatgggaacacaatgcttgagaaaccctttatttgcatcatcatcacctaaaacagagagtatttctattgcgttaacattaaaccca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15519865 |
agcatgcttgtgaatgggaacacaatgcttgagaaaccctttatttg---catcatcacctaaaacagagagtatttctattgcgttaacattaaaccca |
15519961 |
T |
|
| Q |
201 |
tctacataacctacatgtacaaatattattcatcaacacttttaggtttcaaattttcctatttataatctggattggctgaaccacctgttatgatatt |
300 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15519962 |
tctacat-atctacatgtacaaatattattcatcaacacttttaggtttcaaattttcctatttataatctggattggctgaaccacctgttataatatt |
15520060 |
T |
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| Q |
301 |
agggtagttagtattctccttggt |
324 |
Q |
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|||||||||||||||||||||||| |
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| T |
15520061 |
agggtagttagtattctccttggt |
15520084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 15656605 - 15656759
Alignment:
| Q |
1 |
caatatgcagtagagtaggattcccatttgttatggcagcattttttagcttattctctttgtctataatgcgcttagctgctggccagtttccattcag |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||| || |
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| T |
15656605 |
caatatgcagtagagtaggatacccatttgttatggcagcatttttgagcttattctctttctctatgatgcgcttagctgccggccagtttccatttag |
15656704 |
T |
|
| Q |
101 |
agcatgcttgtgaatgggaacacaatgcttgagaaaccctttatttgcatcatca |
155 |
Q |
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| T |
15656705 |
agcatgcttgtgaatgggaacacaaaggttgagaaaccttttccttggatcatca |
15656759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 15626960 - 15627158
Alignment:
| Q |
1 |
caatatgcagtagagtaggattcccatttgttatggcagcattttttagcttattctctttgtctataatgcgcttagctgctggccagtttccattcag |
100 |
Q |
| |
|
||||||||| ||| || ||| |||||||| ||||||||||||||| ||||||| |||| ||||| |||||||| |||||||||||||||||||| || |
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| T |
15626960 |
caatatgcaatagtgttggacacccatttgctatggcagcatttttcagcttatcgtcttcgtctaagatgcgcttggctgctggccagtttccatttag |
15627059 |
T |
|
| Q |
101 |
agcatgcttgtgaatgggaacacaatgcttgagaaaccctttatttgcatcatcatcacctaaaacagagagtatttctattgcgttaacattaaaccca |
200 |
Q |
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|||||| |||||||||||||||||| |||||||||||| ||| ||| ||||| ||||||||||||| |||||||||||||||||||||||||| || |
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| T |
15627060 |
agcatgtttgtgaatgggaacacaaagcttgagaaaccttttccttg---gatcattacctaaaacagagtgtatttctattgcgttaacattaaactca |
15627156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 15495725 - 15495877
Alignment:
| Q |
2 |
aatatgcagtagagtaggattcccatttgttatggcagcattttttagcttattctctttgtctataatgcgcttagctgctggccagtttccattcaga |
101 |
Q |
| |
|
|||||||||||| ||| | |||||||| ||||||||||||||| |||| ||||| |||||||| ||||| || ||||| ||||||||||| || ||| |
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| T |
15495725 |
aatatgcagtagtgtatgccacccatttgctatggcagcatttttaagctcattctgtttgtctaagatgcgtttggctgcaggccagtttccgtttaga |
15495824 |
T |
|
| Q |
102 |
gcatgcttgtgaatgggaacacaatgcttgagaaaccctttatttgcatcatc |
154 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||| |||| |||||| |
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| T |
15495825 |
gcatgcttgtgaatgggaacacaaaacttgagaaaccttttgtttggatcatc |
15495877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 15647286 - 15647422
Alignment:
| Q |
1 |
caatatgcagtagagtaggattcccatttgttatggcagcattttttagcttattctctttgtctataatgcgcttagctgctggccagtttccattcag |
100 |
Q |
| |
|
||||||||| ||| ||||| |||||||||||||||||||||||| ||||| ||||||||||||| ||||| ||||||||| |||| ||||| || || |
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| T |
15647286 |
caatatgcaatagtgtaggccacccatttgttatggcagcatttttgagcttcttctctttgtctaagatgcggttagctgctagccaatttccgtttag |
15647385 |
T |
|
| Q |
101 |
agcatgcttgtgaatgggaacacaatgcttgagaaac |
137 |
Q |
| |
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||||||||||||||||||||| ||| | ||||||||| |
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| T |
15647386 |
agcatgcttgtgaatgggaacgcaaaggttgagaaac |
15647422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 15608911 - 15609044
Alignment:
| Q |
3 |
atatgcagtagagtaggattcccatttgttatggcagcattttttagcttattctctttgtctataatgcgcttagctgctggccagtttccattcagag |
102 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||| | ||||| ||||||| ||| | || |||||| |||||||||||| |||| |
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| T |
15608911 |
atatgcagtagagtaggatacccatttgttatggcagcatttttgagcctgttctcgttgtctaagatgtgtttggctgctcgccagtttccatgtagag |
15609010 |
T |
|
| Q |
103 |
catgcttgtgaatgggaacacaatgcttgagaaa |
136 |
Q |
| |
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||||||||| ||| ||||||||| | |||||||| |
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| T |
15609011 |
catgcttgtaaattggaacacaaaggttgagaaa |
15609044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 15536062 - 15536203
Alignment:
| Q |
1 |
caatatgcagtagagtaggattcccatttgttatggcagcattttttagcttattctcttt----gtctataatgcgcttagctgctggccagtttccat |
96 |
Q |
| |
|
||||||||| |||||||||| |||| || ||||||||||||||| |||||||||||| | ||||| ||| |||| ||||| ||||||||||| | |
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| T |
15536062 |
caatatgcaatagagtaggagacccaaatgctatggcagcatttttgagcttattctctatatatgtctaagatgtgcttggctgcaggccagtttccgt |
15536161 |
T |
|
| Q |
97 |
tcagagcatgcttgtgaatgggaacacaatgcttgagaaacc |
138 |
Q |
| |
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| T |
15536162 |
ttagagcatgcttgtgaatgggaacacaatgcttgagaaacc |
15536203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 15536249 - 15536282
Alignment:
| Q |
167 |
agagagtatttctattgcgttaacattaaaccca |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
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| T |
15536249 |
agagagtatttctattccgttaacattaaaccca |
15536282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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