View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16965_high_20 (Length: 297)

Name: NF16965_high_20
Description: NF16965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16965_high_20
NF16965_high_20
[»] chr5 (14 HSPs)
chr5 (15-285)||(41337480-41337750)
chr5 (8-285)||(41324756-41325033)
chr5 (8-285)||(41328733-41329010)
chr5 (8-280)||(41316692-41316964)
chr5 (8-259)||(41332666-41332917)
chr5 (14-285)||(31187930-31188201)
chr5 (8-259)||(41286859-41287109)
chr5 (14-285)||(31177867-31178138)
chr5 (14-285)||(31225577-31225848)
chr5 (82-275)||(41310967-41311164)
chr5 (74-259)||(41366911-41367096)
chr5 (35-215)||(41431934-41432114)
chr5 (239-290)||(41305235-41305286)
chr5 (75-158)||(14235879-14235962)
[»] chr4 (1 HSPs)
chr4 (18-263)||(17248769-17249014)


Alignment Details
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 285
Target Start/End: Original strand, 41337480 - 41337750
Alignment:
15 ccatttgcaggacatgttcgctgctggtagtgcaacatcgtcaggggttgtgataagggcgatgtctgagatgttaaagaatccaaaggtaatggatgaa 114  Q
    ||||||||||||| |||||  |||||| || | ||||||||||||  ||||| || |||||||||| |||||| ||||||| ||||  |||||||| |||    
41337480 ccatttgcaggacttgttcattgctggcagcgaaacatcgtcaggaattgtgctatgggcgatgtcggagatgataaagaacccaatagtaatggaagaa 41337579  T
115 gcacaaagtgaggtaagaagagtgtttgacaaaaaggggtatgtggatgagacagagttgaatcagttactatacttaaaatgtatcatcaaagaaacac 214  Q
    ||||||  ||||||||||||||||||||| |||||||||||||| || |||||||||||| | |||||   ||||||||| ||| ||||||||||||||     
41337580 gcacaagttgaggtaagaagagtgtttgataaaaaggggtatgtagacgagacagagttgcaacagttgacatacttaaagtgtgtcatcaaagaaacat 41337679  T
215 taaggctacatcctcctggaccattgttactcccaagagaaagtagggagagttgccaaatcaatgagtat 285  Q
    | |||||||||||| ||| ||| |||||  | |||||||||||||| ||||| ||  ||||||||| ||||    
41337680 ttaggctacatcctactgtacctttgttggttccaagagaaagtagagagagatgtgaaatcaatgggtat 41337750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 8 - 285
Target Start/End: Original strand, 41324756 - 41325033
Alignment:
8 tgttattccatttgcaggacatgttcgctgctggtagtgcaacatcgtcaggggttgtgataagggcgatgtctgagatgttaaagaatccaaaggtaat 107  Q
    ||||| |||||||| ||||||| |||| ||||||||  | ||||||||||  |  |||| || ||||||| ||||||||| |||||||||||||||| ||    
41324756 tgttaatccatttgtaggacatattcgatgctggtaccgaaacatcgtcaacgactgtgttatgggcgatatctgagatggtaaagaatccaaaggtgat 41324855  T
108 ggatgaagcacaaagtgaggtaagaagagtgtttgacaaaaaggggtatgtggatgagacagagttgaatcagttactatacttaaaatgtatcatcaaa 207  Q
    ||| |||||||||  ||||||||||||||| ||||| |  ||||||| ||||||||||||||||||| | || ||  |||||||||||| | | |||||     
41324856 ggaagaagcacaagctgaggtaagaagagtttttgataggaaggggtttgtggatgagacagagttgcaccaattgatatacttaaaatctgtgatcaag 41324955  T
208 gaaacactaaggctacatcctcctggaccattgttactcccaagagaaagtagggagagttgccaaatcaatgagtat 285  Q
    |||||| | |||||||||||  | | ||| |||||||| |||||||||||||||||||| ||||||||||||| ||||    
41324956 gaaacaatgaggctacatccaaccgtaccgttgttacttccaagagaaagtagggagagatgccaaatcaatgggtat 41325033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 8 - 285
Target Start/End: Original strand, 41328733 - 41329010
Alignment:
8 tgttattccatttgcaggacatgttcgctgctggtagtgcaacatcgtcaggggttgtgataagggcgatgtctgagatgttaaagaatccaaaggtaat 107  Q
    ||||| |||||||| |||||||||||  ||||||||  | ||||||||||  |||| || || ||||||||||||||||| | ||||| |||||||||||    
41328733 tgttaatccatttgtaggacatgttccttgctggtaccgaaacatcgtcacaggttctgttatgggcgatgtctgagatggtgaagaacccaaaggtaat 41328832  T
108 ggatgaagcacaaagtgaggtaagaagagtgtttgacaaaaaggggtatgtggatgagacagagttgaatcagttactatacttaaaatgtatcatcaaa 207  Q
    ||| |||||||||  ||| ||||| ||||||||||| ||||||| |||||||||||||||||||||| | || ||  |||||||||| |   ||||||||    
41328833 ggaagaagcacaagatgaagtaagtagagtgtttgataaaaaggagtatgtggatgagacagagttgcaccaattgatatacttaaagtccgtcatcaaa 41328932  T
208 gaaacactaaggctacatcctcctggaccattgttactcccaagagaaagtagggagagttgccaaatcaatgagtat 285  Q
    |||||| | ||| | |||||   || |||||||||| | |||||||||||||||||||| ||||||||||||| ||||    
41328933 gaaacattgaggttgcatcccgttgcaccattgttagttccaagagaaagtagggagagatgccaaatcaatgggtat 41329010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 8 - 280
Target Start/End: Original strand, 41316692 - 41316964
Alignment:
8 tgttattccatttgcaggacatgttcgctgctggtagtgcaacatcgtcaggggttgtgataagggcgatgtctgagatgttaaagaatccaaaggtaat 107  Q
    ||||| ||||||||||||||||||| | |||||||| || ||||||||||| || ||||||  |||||||||||| |||| |||| ||  |||| |||||    
41316692 tgttaatccatttgcaggacatgtttggtgctggtactgaaacatcgtcagaggctgtgatttgggcgatgtctgcgatggtaaaaaactcaaatgtaat 41316791  T
108 ggatgaagcacaaagtgaggtaagaagagtgtttgacaaaaaggggtatgtggatgagacagagttgaatcagttactatacttaaaatgtatcatcaaa 207  Q
    |||  ||||||||  ||| ||||||||||||||||| |||||||| ||||||||||||||||||||| | || ||  |||||||||| | | ||||||||    
41316792 ggaacaagcacaagctgaagtaagaagagtgtttgataaaaagggatatgtggatgagacagagttgtaccaattgatatacttaaagtctgtcatcaaa 41316891  T
208 gaaacactaaggctacatcctcctggaccattgttactcccaagagaaagtagggagagttgccaaatcaatg 280  Q
    |||||| | ||| |  |||||  ||  ||||||||| | |||||||||||||||||||| |||||||||||||    
41316892 gaaacattgaggttgtatcctgttgctccattgttagttccaagagaaagtagggagagatgccaaatcaatg 41316964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 41332666 - 41332917
Alignment:
8 tgttattccatttgcaggacatgttcgctgctggtagtgcaacatcgtcaggggttgtgataagggcgatgtctgagatgttaaagaatccaaaggtaat 107  Q
    ||||| |||||||| |||| ||||||  ||||||||  | ||||||||||| |||  || || ||||||||||||||||| ||||||| ||||||||| |    
41332666 tgttaatccatttgtaggatatgttcattgctggtaccgaaacatcgtcagaggtattgttatgggcgatgtctgagatggtaaagaacccaaaggtatt 41332765  T
108 ggatgaagcacaaagtgaggtaagaagagtgtttgacaaaaaggggtatgtggatgagacagagttgaatcagttactatacttaaaatgtatcatcaaa 207  Q
    ||| |||||||| | ||| ||||||||||||||||| ||||||||||||||||||||| |||||||| | || ||  |||||||||| | | || |||||    
41332766 ggaagaagcacagattgaagtaagaagagtgtttgataaaaaggggtatgtggatgagtcagagttgcaccaattgatatacttaaagtctgtcgtcaaa 41332865  T
208 gaaacactaaggctacatcctcctggaccattgttactcccaagagaaagta 259  Q
    |||||| | ||| |||||||   || |||||||||| | |||||||||||||    
41332866 gaaacattgaggttacatcccgttgcaccattgttaattccaagagaaagta 41332917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 285
Target Start/End: Complemental strand, 31188201 - 31187930
Alignment:
14 tccatttgcaggacatgttcgctgctggtagtgcaacatcgtcaggggttgtgataagggcgatgtctgagatgttaaagaatccaaaggtaatggatga 113  Q
    |||||||| |||| ||||| | ||||||||  | ||||||||| |||| |||| || ||| ||| ||||||||| ||||||| |||||| |||||||  |    
31188201 tccatttgtaggatatgtttggtgctggtacggaaacatcgtccggggctgtgctatgggggatatctgagatggtaaagaacccaaagataatggagaa 31188102  T
114 agcacaaagtgaggtaagaagagtgtttgacaaaaaggggtatgtggatgagacagagttgaatcagttactatacttaaaatgtatcatcaaagaaaca 213  Q
    |||||||  ||| ||||||| ||||||||| |||||||||||||| ||||| ||||||||| | || ||  |||||||||| | ||| |||| |||||||    
31188101 agcacaagctgaagtaagaaaagtgtttgataaaaaggggtatgtcgatgaaacagagttgcaccaattgatatacttaaagtctataatcagagaaaca 31188002  T
214 ctaaggctacatcctcctggaccattgttactcccaagagaaagtagggagagttgccaaatcaatgagtat 285  Q
     | |||||||||||| |||  || |||||  | |||||||||||||| ||||| ||||||||||||| ||||    
31188001 ttgaggctacatccttctgtgcctttgttggttccaagagaaagtagagagagatgccaaatcaatgggtat 31187930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 41286859 - 41287109
Alignment:
8 tgttattccatttgcaggacatgttcgctgctggtagtgcaacatcgtcaggggttgtgataagggcgatgtctgagatgttaaagaatccaaaggtaat 107  Q
    ||||| ||||||| |||||| ||||| |||||||| | | |||||||||||||| |||| || | | ||||||||||||| |||||||||||||||| ||    
41286859 tgttaatccatttacaggacttgttcactgctggtggcgaaacatcgtcaggggctgtgttatgagggatgtctgagatggtaaagaatccaaaggtgat 41286958  T
108 ggatgaagcacaaagtgaggtaagaagagtgtttgacaaaaaggggtatgtggatgagacagagttgaatcagttactatacttaaaatgtatcatcaaa 207  Q
    |||  ||||||||  ||||||||||||||||||||| | |||||||||||||| ||||||||||||| | || ||  ||||||| || | | | ||||||    
41286959 gga-aaagcacaagctgaggtaagaagagtgtttgatagaaaggggtatgtggttgagacagagttgcaccaattgatatacttgaagtctgttatcaaa 41287057  T
208 gaaacactaaggctacatcctcctggaccattgttactcccaagagaaagta 259  Q
    |||||| | ||| | |||||| ||  |||||||||  | |||||||||||||    
41287058 gaaacaatgaggttgcatcctgctataccattgttgattccaagagaaagta 41287109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 285
Target Start/End: Complemental strand, 31178138 - 31177867
Alignment:
14 tccatttgcaggacatgttcgctgctggtagtgcaacatcgtcaggggttgtgataagggcgatgtctgagatgttaaagaatccaaaggtaatggatga 113  Q
    |||||||| |||| ||||| | || |||||  | |||||| ||||| |||||| || ||| ||| ||||||||| ||||||| |||||| ||||| | ||    
31178138 tccatttgtaggatatgtttgttggtggtaccgaaacatcatcaggagttgtgttatgggggatatctgagatgataaagaacccaaagataatgaagga 31178039  T
114 agcacaaagtgaggtaagaagagtgtttgacaaaaaggggtatgtggatgagacagagttgaatcagttactatacttaaaatgtatcatcaaagaaaca 213  Q
    |||||||  ||| ||||||| ||||||||| ||||||||| |||| ||||| ||||||||| | || ||  |||||||||| | ||| ||||||||||||    
31178038 agcacaagctgaagtaagaaaagtgtttgataaaaaggggcatgtcgatgaaacagagttgcaccatttgatatacttaaagtctataatcaaagaaaca 31177939  T
214 ctaaggctacatcctcctggaccattgttactcccaagagaaagtagggagagttgccaaatcaatgagtat 285  Q
     ||||| | |||||| ||  ||| |||||  | |||||||||||||| ||||| ||||||||||||| ||||    
31177938 ttaaggttgcatccttctttacctttgttgattccaagagaaagtagagagagatgccaaatcaatgggtat 31177867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 14 - 285
Target Start/End: Original strand, 31225577 - 31225848
Alignment:
14 tccatttgcaggacatgttcgctgctggtagtgcaacatcgtcaggggttgtgataagggcgatgtctgagatgttaaagaatccaaaggtaatggatga 113  Q
    |||||||| |||| ||||| ||||||||||| | ||| || |||||||||||| || ||| ||| ||||||||| ||||||| |||||| ||||||| ||    
31225577 tccatttgtaggatatgtttgctgctggtagcgaaacgtcatcaggggttgtgttatgggggatatctgagatggtaaagaacccaaagataatggagga 31225676  T
114 agcacaaagtgaggtaagaagagtgtttgacaaaaaggggtatgtggatgagacagagttgaatcagttactatacttaaaatgtatcatcaaagaaaca 213  Q
    |||||||  ||| |||||||   ||||||| ||||||||  |||| ||||| ||||||||| | || ||| |||||||||| | ||| || | |||||||    
31225677 agcacaagctgaagtaagaaacatgtttgataaaaagggacatgtcgatgaaacagagttgcaccaattaatatacttaaagtctataattagagaaaca 31225776  T
214 ctaaggctacatcctcctggaccattgttactcccaagagaaagtagggagagttgccaaatcaatgagtat 285  Q
     | ||  |||||||  ||| ||| |||||  | |||||||||||||| ||||| ||||||||||||| ||||    
31225777 ttgagattacatccatctgcacctttgttggttccaagagaaagtagagagagatgccaaatcaatgggtat 31225848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 82 - 275
Target Start/End: Original strand, 41310967 - 41311164
Alignment:
82 gagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaaagggg----tatgtggatgagacagagttgaat 177  Q
    |||||| ||||||| |||||||||||||| |||||||||  ||| ||||||||||||||||| |||||||||    |||||||||||||  |||||| |     
41310967 gagatggtaaagaacccaaaggtaatggaagaagcacaagttgaagtaagaagagtgtttgataaaaaggggtatatatgtggatgagatggagttgcac 41311066  T
178 cagttactatacttaaaatgtatcatcaaagaaacactaaggctacatcctcctggaccattgttactcccaagagaaagtagggagagttgccaaat 275  Q
    | |||  |||||||||| | | |||||||||||||||| ||| | |||||   || |||||||||| | |||||||||||||||||||| ||||||||    
41311067 ctgttgatatacttaaagtttgtcatcaaagaaacactgaggttgcatccagttgcaccattgttagttccaagagaaagtagggagagatgccaaat 41311164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 74 - 259
Target Start/End: Original strand, 41366911 - 41367096
Alignment:
74 cgatgtctgagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaaaggggtatgtggatgagacagagtt 173  Q
    |||||||||||||| |||||||||| | ||||||||| | |||||||  ||||||||||||||||||||| |||||||| |||||| |||||||||||||    
41366911 cgatgtctgagatggtaaagaatccgatggtaatggaagcagcacaagttgaggtaagaagagtgtttgataaaaagggatatgtgaatgagacagagtt 41367010  T
174 gaatcagttactatacttaaaatgtatcatcaaagaaacactaaggctacatcctcctggaccattgttactcccaagagaaagta 259  Q
    | | || ||  ||||||||||||   |||||||||||||| | ||| | |||||| ||  |||||| ||  | |||||||||||||    
41367011 gcaccaattgatatacttaaaatccgtcatcaaagaaacaatgaggttgcatccttctataccattattgattccaagagaaagta 41367096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 35 - 215
Target Start/End: Original strand, 41431934 - 41432114
Alignment:
35 ctgctggtagtgcaacatcgtcaggggttgtgataagggcgatgtctgagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaag 134  Q
    ||||||||| || ||| ||||||| ||||||  || |||||||||||||||||   ||||| || || || ||||| |||||||||  ||||||||||||    
41431934 ctgctggtactgaaacttcgtcagtggttgtcttatgggcgatgtctgagatggcgaagaacccgaatgtgatggaagaagcacaagctgaggtaagaag 41432033  T
135 agtgtttgacaaaaaggggtatgtggatgagacagagttgaatcagttactatacttaaaatgtatcatcaaagaaacact 215  Q
    ||||||||| |  || ||||||||||||||||| |||||| |  | ||  ||||||| || | ||||||||||||||||||    
41432034 agtgtttgatatgaaagggtatgtggatgagactgagttgcactaattgatatacttgaagtctatcatcaaagaaacact 41432114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 41305235 - 41305286
Alignment:
239 tgttactcccaagagaaagtagggagagttgccaaatcaatgagtataatat 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
41305235 tgttactcccaagagaaagtagggagagttgccaaatcaatgagtatgatat 41305286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 158
Target Start/End: Original strand, 14235879 - 14235962
Alignment:
75 gatgtctgagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaaaggggtatgt 158  Q
    ||||||||||||  ||||||| || | ||| ||||| |||||||||  |||||||||||| | |||||| | ||||||||||||    
14235879 gatgtctgagattgtaaagaaccctagggtgatggaagaagcacaagctgaggtaagaagggagtttgatagaaaggggtatgt 14235962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 17249014 - 17248769
Alignment:
18 tttgcaggacatgttcgctgctggtagtgcaacatcgtcaggggttgtgataagggcgatgtctgagatgttaaagaatccaaaggtaatggatgaagca 117  Q
    ||||||||||||||| ||||||||||| | ||||||||| ||| ||||| || |||  |||||||||||  |||| || |||||||| ||||| | ||||    
17249014 tttgcaggacatgtttgctgctggtagcgaaacatcgtctgggattgtgttatggggaatgtctgagataataaaaaacccaaaggtgatggaagcagca 17248915  T
118 caaagtgaggtaagaagagtgtttgacaaaaaggggtatgtggatgagacagagttgaatcagttactatacttaaaatgtatcatcaaagaaacactaa 217  Q
    |||  |||||||||||| || ||||| | |||||||||||| ||||| || |||||| |||| ||| |||||||||| | | |||||||||||||||| |    
17248914 caagctgaggtaagaagtgtttttgatagaaaggggtatgtagatgaaacggagttggatcaattaatatacttaaattctgtcatcaaagaaacactga 17248815  T
218 ggctacatcctcctggaccattgttactcccaagagaaagtaggga 263  Q
    |||| ||||||  || |||||||||  | || ||| ||||||||||    
17248814 ggctgcatcctattgtaccattgttgattcctagacaaagtaggga 17248769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University