View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16965_high_23 (Length: 263)
Name: NF16965_high_23
Description: NF16965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16965_high_23 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 12 - 263
Target Start/End: Complemental strand, 14570279 - 14570028
Alignment:
| Q |
12 |
acagataatattgaaaatactataataagaatgcattaaatataacgtacaatataaactaaaacgctacaatcataaatgaaaaacgtgacaaacataa |
111 |
Q |
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| T |
14570279 |
acagataatattgaaaatactataataagaatgcattaaatataacgtacaatataaactaaaacggtacaatcataaatgaaaaacgtgacaaacataa |
14570180 |
T |
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| Q |
112 |
taattattggtaacaaatttaaatcttatatagtctccaatataaaaattctgctgaacaataaattggttccacttcggaccaatttgtgttgtgttgt |
211 |
Q |
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| T |
14570179 |
taattattggtaacaaatttaaatcttatatagtctccaatataaaaattctgctgaacaataaattggttccacttcggaccaatttgtgttgtgttgt |
14570080 |
T |
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| Q |
212 |
tgatgttgtttttctccataatctccacaaaatataatgttatcgcacacat |
263 |
Q |
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| T |
14570079 |
tgatgttgtttttcttcataatctccacaaaatataatgttatcgcacacat |
14570028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 19782264 - 19782054
Alignment:
| Q |
16 |
ataatattgaaaatactataataagaatgcattaaatataacgtacaatataaactaaaacgctacaatcataaatgaaaaacgtgacaaacataataat |
115 |
Q |
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| T |
19782264 |
ataatattgaaaatactataataagaatgcattaaatataacgtacaatataaactaaaacggtaaaatcataaatgaaaaacatgacaaacataataat |
19782165 |
T |
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| Q |
116 |
tattggtaacaaatttaaatcttatatagtctccaatataaaaattctgctgaacaataaattggttccacttcggaccaatttgtgttgtgttgttgat |
215 |
Q |
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| T |
19782164 |
tattggtaacaaatttaaatcttatatagtctccaatataaaaattctgctgaacaataaattggttccagttcggaccaatttgtgttgtgttgttgat |
19782065 |
T |
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| Q |
216 |
gttgtttttct |
226 |
Q |
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|||||| |||| |
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| T |
19782064 |
gttgttcttct |
19782054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 19782033 - 19781994
Alignment:
| Q |
224 |
tctccataatctccacaaaatataatgttatcgcacacat |
263 |
Q |
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| T |
19782033 |
tctccataatctccacaaaatataatgttgtcgtacacat |
19781994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 179
Target Start/End: Original strand, 54599021 - 54599118
Alignment:
| Q |
82 |
aatcataaatgaaaaacgtgacaaacataataattattggtaacaaatttaaatcttatatagtctccaatataaaaattctgctgaacaataaattg |
179 |
Q |
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|||||||| |||||||||||||| |||||||||||||| || |||||||||||||||||| | || |||||||||| |||||||| || |||||| |
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| T |
54599021 |
aatcataattgaaaaacgtgacatacataataattattcaaaataaatttaaatcttatataaccccctatataaaaatcctgctgaagaacaaattg |
54599118 |
T |
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