View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16965_high_32 (Length: 204)

Name: NF16965_high_32
Description: NF16965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16965_high_32
NF16965_high_32
[»] chr7 (3 HSPs)
chr7 (22-86)||(25323418-25323482)
chr7 (24-65)||(5336147-5336187)
chr7 (28-68)||(12966242-12966282)
[»] chr8 (1 HSPs)
chr8 (24-67)||(39953276-39953319)
[»] chr4 (2 HSPs)
chr4 (23-65)||(8598907-8598949)
chr4 (24-64)||(1211404-1211444)
[»] chr3 (1 HSPs)
chr3 (23-68)||(27893315-27893360)


Alignment Details
Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 25323482 - 25323418
Alignment:
Q  22 taaagtcttatcccaatatgtgggttcggctacatgaatcaaacaatatcaatggaagatattat 86  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25323482 taaagtcttatcccagtatgtgggttcggctacatgaatcaaacaatatcaatggaagatattat 25323418  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 5336187 - 5336147
Alignment:
Q  24 aagtcttatcccaatatgtgggttcggctacatgaatcaaac 65  Q
    ||||||||||||| ||||||||| ||||||||||||||||||    
T  5336187 aagtcttatcccactatgtgggt-cggctacatgaatcaaac 5336147  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 12966282 - 12966242
Alignment:
Q  28 cttatcccaatatgtgggttcggctacatgaatcaaacaat 68  Q
    ||||||||| || ||||| ||||||||||||||||||||||    
T  12966282 cttatcccactaagtgggatcggctacatgaatcaaacaat 12966242  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 39953276 - 39953319
Alignment:
Q  24 aagtcttatcccaatatgtgggttcggctacatgaatcaaacaa 67  Q
    ||||||||||||| || ||||| |||||||||||||||||||||    
T  39953276 aagtcttatcccactaagtggggtcggctacatgaatcaaacaa 39953319  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 8598907 - 8598949
Alignment:
Q  23 aaagtcttatcccaatatgtgggttcggctacatgaatcaaac 65  Q
    |||||||||||||| || ||||| |||||||||||||||||||    
T  8598907 aaagtcttatcccattaagtgggatcggctacatgaatcaaac 8598949  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 1211404 - 1211444
Alignment:
Q  24 aagtcttatcccaatatgtgggttcggctacatgaatcaaa 64  Q
    ||||||||||||| || ||||| ||||||||||||||||||    
T  1211404 aagtcttatcccattaagtggggtcggctacatgaatcaaa 1211444  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 27893360 - 27893315
Alignment:
Q  23 aaagtcttatcccaatatgtgggttcggctacatgaatcaaacaat 68  Q
    |||| ||||||||| || ||||| ||||||||||||||||||||||    
T  27893360 aaagccttatcccactaagtgggatcggctacatgaatcaaacaat 27893315  T

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