View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16965_high_9 (Length: 407)
Name: NF16965_high_9
Description: NF16965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16965_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 38167579 - 38167184
Alignment:
| Q |
1 |
ctctcctcttcaaaacattacatagacaaaggtcaggaacctatggatatttccagcttttccaaggtgaaaacgaagatcacaaagctaccatgtagaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38167579 |
ctctcctcttcaaaacattacatagacaaaggtcaggaacctatggatatttccagctttttcaaggtgaaaacgaagatcacaaagctaccatgtagaa |
38167480 |
T |
|
| Q |
101 |
atttgtttacgcctcatcaacatcaagctccatattgatttagtttgccagcacattcaccgtgaacctttcgatcccttatgttctgataattgacaaa |
200 |
Q |
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||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38167479 |
atttgttcacgcctcatcaacatcaagctccat-ttgatttagtttgccagcacattcaccgtgaacctttcgatcccttatgttctgataattgacaaa |
38167381 |
T |
|
| Q |
201 |
tacggcaaacaggacataccatttataagaaagtccaatgcaagatagtttgttcagccctattatcaataaactcataggaaccaagctaaaaacatat |
300 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38167380 |
tacggcaaacaggacataccatttataggaaagtccgatgcaagatagtttgttcagccctattatcaataaactcataggaaccaagctaaaaacatat |
38167281 |
T |
|
| Q |
301 |
gcaaaattttggtagcaataaaccccatcagaaaagagttaattttatcaattattatttgcgcacaatgcactcaatatcatacacagctcctatg |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
38167280 |
gcaaaattttggtagcaataaaccccatcagaaaagagttaattttatcaattattatttgctcacaatgcactcaatatcatacatagctcctatg |
38167184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 38199525 - 38199920
Alignment:
| Q |
1 |
ctctcctcttcaaaacattacatagacaaaggtcaggaacctatggatatttccagcttttccaaggtgaaaacgaagatcacaaagctaccatgtagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38199525 |
ctctcctcttcaaaacattacatagacaaaggtcaggaacctatggatatttccagctttttcaaggtgaaaacgaagatcacaaagctaccatgtagaa |
38199624 |
T |
|
| Q |
101 |
atttgtttacgcctcatcaacatcaagctccatattgatttagtttgccagcacattcaccgtgaacctttcgatcccttatgttctgataattgacaaa |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38199625 |
atttgttcacgcctcatcaacatcaagctccat-ttgatttagtttgccagcacattcaccgtgaacctttcgatcccttatgttctgataattgacaaa |
38199723 |
T |
|
| Q |
201 |
tacggcaaacaggacataccatttataagaaagtccaatgcaagatagtttgttcagccctattatcaataaactcataggaaccaagctaaaaacatat |
300 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38199724 |
tacggcaaacaggacataccatttataggaaagtccgatgcaagatagtttgttcagccctattatcaataaactcataggaaccaagctaaaaacatat |
38199823 |
T |
|
| Q |
301 |
gcaaaattttggtagcaataaaccccatcagaaaagagttaattttatcaattattatttgcgcacaatgcactcaatatcatacacagctcctatg |
397 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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|
| T |
38199824 |
gcaaaattttggtagcaataaaccccatcagaaaagagttaattttatcaattattatttgctcacaatgcactcaatatcatacatagctcctatg |
38199920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 191 - 384
Target Start/End: Complemental strand, 27012459 - 27012268
Alignment:
| Q |
191 |
aattgacaaatacggcaaacaggacataccatttataagaaagtccaatgcaagatagtttgttcagccctattatcaataaactcataggaaccaagct |
290 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| |||| |||| || ||||||||||||||||||||||| || ||||||||||||||| |||| ||||| |
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| T |
27012459 |
aattgacaaatacggaaaacaggactgaccatgtataggaaaatcacatgcaagatagtttgttcagcccaatcatcaataaactcatatgaacaaagct |
27012360 |
T |
|
| Q |
291 |
aaaaacatatgcaaaattttggtagcaataaaccccatcagaaaagagttaattttatcaattattatttgcgcacaatgcactcaatatcata |
384 |
Q |
| |
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||| ||| | || |||||||||||||| |||| |||||||||| ||||||||||||||| |||||||||||| |||||| |||||| ||||| |
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| T |
27012359 |
aaagacacaagctaaattttggtagcagtaaa-cccatcagaagagagttaattttatc-attattatttgcatgcaatgctctcaatgtcata |
27012268 |
T |
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