View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16965_low_12 (Length: 358)
Name: NF16965_low_12
Description: NF16965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16965_low_12 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 16 - 358
Target Start/End: Original strand, 43611729 - 43612071
Alignment:
| Q |
16 |
tagagtagtctagtgttagaataacaacttgtaatggaagaaccaaagaagcgataaataacaatgacaatgaacacaatcatttgtttatgcaatttgg |
115 |
Q |
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| T |
43611729 |
tagagtagtctagtgttagaataacaacttgtaatggaagaaccaaagaagcgataaataacaatgacaatgaacacaatcatttgtttatgcaatttgg |
43611828 |
T |
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| Q |
116 |
tccagtgtgcctacatctgcgactatagagcagctgtagtcctgtattattacagtgttacaattacaaacaatatatataagactacagtccagattac |
215 |
Q |
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| T |
43611829 |
tccagtgtgcctacatctgcgactatagagcagctgtagtcctgtattattgcagtgttacaattacaaaccatatatataagactacggtccagattac |
43611928 |
T |
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| Q |
216 |
aacaatacccctgaaccgcaccgtctcactcactcagctcccctgccccttgccctattatatgcttatgagccatactgaacatatcagtactaatgtt |
315 |
Q |
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| T |
43611929 |
aacaatacccctgaatcgcaccgtctcactcactcagctcccctgccccttgccctattatatgcttatgagccatactgaacatatcagtactaatgtt |
43612028 |
T |
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| Q |
316 |
gaacaaagtgttggttgtttgaaatgaatataggaaattgata |
358 |
Q |
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| T |
43612029 |
gaataaagtgttggttgtttgaaatgaatataggaaattgata |
43612071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 34940234 - 34940182
Alignment:
| Q |
179 |
ttacaaacaatatatataagactacagtccagattacaacaatacccctgaac |
231 |
Q |
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| T |
34940234 |
ttacaagccatatatatagtactacggtccagattagaacaatacccctgaac |
34940182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 168
Target Start/End: Original strand, 27407245 - 27407329
Alignment:
| Q |
81 |
gacaatgaacacaatcatttgtttatgcaatttggtccagtgtgcctacatctgcgactatagagcagctgtagtcctgtattattac |
168 |
Q |
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| T |
27407245 |
gacaataaacacaattatttgattacacaatttggccaagtgt---tacatctgcgactgtagagaagctatagtcctgtattattac |
27407329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 32349735 - 32349776
Alignment:
| Q |
188 |
atatatataagactacagtccagattacaacaatacccctga |
229 |
Q |
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| T |
32349735 |
atatatataatactacggtccagattacaacaatgcccctga |
32349776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 24491 - 24459
Alignment:
| Q |
123 |
tgcctacatctgcgactatagagcagctgtagt |
155 |
Q |
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| T |
24491 |
tgcctacctctgcgactatagagcagctgtagt |
24459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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