View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16965_low_15 (Length: 332)
Name: NF16965_low_15
Description: NF16965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16965_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 229
Target Start/End: Complemental strand, 32534932 - 32534714
Alignment:
| Q |
11 |
agagatgaagagttaaaatctgatatgaacttagtccaaacaaacttggagtaagagaaagagatgtcattacaatagaaagaaaagcatcttgaaatca |
110 |
Q |
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| T |
32534932 |
agagatgaagagttaaaatctgatatgaacttagtgcaaacaaacttagagtaagagaaagagacgtcattacaatagaaagaaaagcatcttgaaatca |
32534833 |
T |
|
| Q |
111 |
tgatctcatgcaagaactcaacaaaattatatttttgaatactttctttcatatctttctataggatttgaattgacggcgttaaataatttttccggtc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32534832 |
tgatctcatgcaagaactcaacaaaattatatttttgaatactttctttcatatctttctataggatttgaattgacggcgttaaataatttttccggtc |
32534733 |
T |
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| Q |
211 |
catagcagtcatctgatct |
229 |
Q |
| |
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||||||||||||||||||| |
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| T |
32534732 |
catagcagtcatctgatct |
32534714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 32534688 - 32534578
Alignment:
| Q |
222 |
tctgatcttcatcaacgacaatgatctcaacaatgtttgatagcatcaagccacttttatctgcagtggcctcaattgtgctaatgtgaaccatcacgaa |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
32534688 |
tctgatcttcatcaacgacaatgatctcaacaatgtttgatagcatcaagccacttttatctgcagtagcctcaattgtgctaatgtaaaccatcacgaa |
32534589 |
T |
|
| Q |
322 |
tgaactcattc |
332 |
Q |
| |
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||||||||||| |
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| T |
32534588 |
tgaactcattc |
32534578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 32112082 - 32111972
Alignment:
| Q |
222 |
tctgatcttcatcaacgacaatgatctcaacaatgtttgatagcatcaagccacttttatctgcagtggcctcaattgtgctaatgtgaaccatcacgaa |
321 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||| |||| ||||||| |
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| T |
32112082 |
tctgatcttcatcaatgacagtgatctcaacaatgtttgatagcagcaagccagttttatctgcagtggcctcaattgcgctaatgcgaactgtcacgaa |
32111983 |
T |
|
| Q |
322 |
tgaactcattc |
332 |
Q |
| |
|
||||||||||| |
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| T |
32111982 |
tgaactcattc |
32111972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 227 - 332
Target Start/End: Complemental strand, 32120120 - 32120015
Alignment:
| Q |
227 |
tcttcatcaacgacaatgatctcaacaatgtttgatagcatcaagccacttttatctgcagtggcctcaattgtgctaatgtgaaccatcacgaatgaac |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||| ||| || ||||||||| |
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| T |
32120120 |
tcttcatcaacgacaatgatctcaacaatgtttgatagcagcaagccagttttatctgcagtggcctcaattatgctaatgcaaacggtcgcgaatgaac |
32120021 |
T |
|
| Q |
327 |
tcattc |
332 |
Q |
| |
|
|||||| |
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|
| T |
32120020 |
tcattc |
32120015 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 324
Target Start/End: Complemental strand, 32183771 - 32183672
Alignment:
| Q |
222 |
tctgatcttcatcaacgacaatgatctcaacaatgtttgatagcatcaagccacttttatctgcagtggcctcaattgtgctaatgtgaaccatcacgaa |
321 |
Q |
| |
|
||||||||||||||| || ||||||||||||||| |||| || |||||||| | |||||| ||||||||||| |||||||| ||||||||||||| |
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| T |
32183771 |
tctgatcttcatcaatgatcgagatctcaacaatgttcgatacca---agccacttgtgtctgcaatggcctcaattatgctaatgcgaaccatcacgaa |
32183675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 332
Target Start/End: Complemental strand, 32159463 - 32159378
Alignment:
| Q |
244 |
gatctcaacaatgtttgatagcatcaagccacttttatctgcagtggcctcaattgtgctaatgtgaaccatcacgaatgaactcattc |
332 |
Q |
| |
|
||||||||||||||| |||| || |||||||| | |||||| |||||||||||||| | ||| |||||||||||||||| ||||||| |
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| T |
32159463 |
gatctcaacaatgttcgatacca---agccacttgtgtctgcaatggcctcaattgtgttcatgcgaaccatcacgaatgagctcattc |
32159378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 268 - 324
Target Start/End: Complemental strand, 32175722 - 32175666
Alignment:
| Q |
268 |
caagccacttttatctgcagtggcctcaattgtgctaatgtgaaccatcacgaatga |
324 |
Q |
| |
|
|||||||||| | |||||| |||||||||||||||||||| |||||||||| ||||| |
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|
| T |
32175722 |
caagccacttgtgtctgcaatggcctcaattgtgctaatgcgaaccatcacaaatga |
32175666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 32178900 - 32178793
Alignment:
| Q |
222 |
tctgatcttcatcaacgacaatgatctcaacaatgtttgatagcatcaagccacttttatctgcagtggcctcaattgtgctaatgtgaaccatcacgaa |
321 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||| | |||||||| | |||||| ||||||||||||| ||||| ||||||||| ||| |
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| T |
32178900 |
tctgatcttcatcaacgatcgagatctcaacaatgttcgatacga---agccacttgtgtctgcaatggcctcaattgtactaatacgaaccatcatgaa |
32178804 |
T |
|
| Q |
322 |
tgaactcattc |
332 |
Q |
| |
|
||| ||||||| |
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| T |
32178803 |
tgagctcattc |
32178793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 332
Target Start/End: Original strand, 32205096 - 32205181
Alignment:
| Q |
244 |
gatctcaacaatgtttgatagcatcaagccacttttatctgcagtggcctcaattgtgctaatgtgaaccatcacgaatgaactcattc |
332 |
Q |
| |
|
|||| |||||||||||||||| |||| |||||||||| ||| ||||||| ||||||||| || ||| |||||| |||||| |||||| |
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| T |
32205096 |
gatcgcaacaatgtttgatag---caagacacttttatcggcaatggcctctattgtgctagtgcgaaacatcacaaatgaagtcattc |
32205181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 229
Target Start/End: Complemental strand, 32112246 - 32112108
Alignment:
| Q |
90 |
aagaaaagcatcttgaaatcatgatctcatgcaagaactcaacaaaattatatttttg-aatactttc-tttcatatctttctataggatttgaattgac |
187 |
Q |
| |
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||||||| ||||||||||| || |||| ||||| | |||||||||||||||||||| ||| ||||| |||||||| ||| ||||||| ||||| | |
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| T |
32112246 |
aagaaaaacatcttgaaat-at--tctcttgcaaaatctcaacaaaattatatttttttaatgctttcctttcatattttttcgtaggattcaaattgcc |
32112150 |
T |
|
| Q |
188 |
ggcgttaaataatttttccggtccatagcagtcatctgatct |
229 |
Q |
| |
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| | |||||||| ||||| |||||||||||||| ||||||| |
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|
| T |
32112149 |
gtcattaaataacgtttccagtccatagcagtcagctgatct |
32112108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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