View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16965_low_16 (Length: 330)
Name: NF16965_low_16
Description: NF16965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16965_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 12 - 314
Target Start/End: Complemental strand, 38307453 - 38307151
Alignment:
| Q |
12 |
gtgagatgaagcattgattgattannnnnnngaagaaagcattaatcgattttgatcacgttagaataggaaataaatgtattacaatgagcgtcaaatg |
111 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38307453 |
gtgatatgaagcattgattgattatttttttgaagaaagcattaatcgattttgatcacgttagaataggaaataaatgtattacaatgagcgttaaatg |
38307354 |
T |
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| Q |
112 |
tgctagctgtggcagctgtagcagtaagagtagtgatatcatcatgagctgatcacagaaacaaggtggtcgcactcagcccccattgcttcagcagcct |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38307353 |
tgctagctgtggcagctgtagcagtaagagtagtgatatcatcatgagctgatcacggaaacaaggtggtcgcactcagcccccattgcttcagcagcct |
38307254 |
T |
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| Q |
212 |
ccactcattgcgcttccagtaatgttgcagctgaagcaacagccatgtcagttttgggcattgtctcgcccttgtttggtgttgatgaggcaactgtggt |
311 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38307253 |
ccactcattgtgcttccagtaatgttgcagctgaagcaacagccatgtcagttttgggcattgtctcgcccttgtttggtgttgatgaggcaactgtggt |
38307154 |
T |
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| Q |
312 |
agc |
314 |
Q |
| |
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||| |
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| T |
38307153 |
agc |
38307151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 299
Target Start/End: Complemental strand, 38268679 - 38268536
Alignment:
| Q |
156 |
tgagctgatcacagaaacaaggtggtcgcactcagcccccattgcttcagcagcctccactcattgcgcttccagtaatgttgcagctgaagcaacagcc |
255 |
Q |
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| T |
38268679 |
tgagctgaccaccgatgcaaggtggtcgcgctcagctcccattgcttcggcagcctccacacattgtgcggcaactagagtggcagccgaagcaacagcc |
38268580 |
T |
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| Q |
256 |
atgtcagttttgggcattgtctcgcccttgtttggtgttgatga |
299 |
Q |
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| ||| || |||| ||| |||| |||||||| |||||||||| |
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| T |
38268579 |
acgtctgtcttggccatcttctcatccttgttttgtgttgatga |
38268536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 38268737 - 38268696
Alignment:
| Q |
118 |
ctgtggcagctgtagcagtaagagtagtgatatcatcatgag |
159 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38268737 |
ctgtggcagctgcagcagtaagagtagtgatatcatcatgag |
38268696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 31707355 - 31707396
Alignment:
| Q |
118 |
ctgtggcagctgtagcagtaagagtagtgatatcatcatgag |
159 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||| |
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| T |
31707355 |
ctgtggcagctgcagcagttagagtagtgatatcatcatgag |
31707396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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