View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16965_low_19 (Length: 317)
Name: NF16965_low_19
Description: NF16965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16965_low_19 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 15519431 - 15519737
Alignment:
| Q |
11 |
taatacttaccatagatgcctgtgtagatacaagcaaagaacaataactcccagtccttctcttcaaagcaatgtatggtttcatcatatagatgccatg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15519431 |
taatacttaccatagatgcctgtgtagatacaagcaaagaacaataactcccagtccttctcttcaaagcaatgtatggtttcatcatatagatgccatg |
15519530 |
T |
|
| Q |
111 |
tcattttgtatcttccttgcaaagcagcatactgaataggagcacatccttttgcaccctttataattggtaacttggggtttattttcagcattaagtc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15519531 |
tcattttgtatcttccttgcaaagcagcatactgaataggagcacatccttttgcaccctttataattggtaacttggggtttattttcagcattaagtc |
15519630 |
T |
|
| Q |
211 |
aacaattttcatgtttccagctgcagcagcaatnnnnnnngcagtgtttccgttcatatcttgcaatgttatatcattgtcatcaagcatcttcaatagc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15519631 |
aacaattttcatgtttccagctgcagcagcaataaaaaaagcagtgtttccgttcatatcttgcaatgttatatcattgtcatcaagcatcttcaatagc |
15519730 |
T |
|
| Q |
311 |
tccttca |
317 |
Q |
| |
|
||||||| |
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|
| T |
15519731 |
tccttca |
15519737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 10 - 317
Target Start/End: Original strand, 15535727 - 15536034
Alignment:
| Q |
10 |
ataatacttaccatagatgcctgtgtagatacaagcaaagaacaataactcccagtccttctcttcaaagcaatgtatggtttcatcatatagatgccat |
109 |
Q |
| |
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||||| ||||||||||||||| |||||||||||||||||||||||| | | ||||||||| | |||||| | || |||||||| |||||| ||||||||| |
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| T |
15535727 |
ataatccttaccatagatgccagtgtagatacaagcaaagaacaatgaattccagtccttgttttcaaaacgatttatggttttatcataaagatgccat |
15535826 |
T |
|
| Q |
110 |
gtcattttgtatcttccttgcaaagcagcatactgaataggagcacatccttttgcaccctttataattggtaacttggggtttattttcagcattaagt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||| || |||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
15535827 |
gtcattttgtatcttccttgcaaagcagcatactgaataggagtatatccttctgtaccccttataattggtaaaatggggtttattttcagcattaagt |
15535926 |
T |
|
| Q |
210 |
caacaattttcatgtttccagctgcagcagcaatnnnnnnngcagtgtttccgttcatatcttgcaatgttatatcattgtcatcaagcatcttcaatag |
309 |
Q |
| |
|
||||||||| || |||||||| ||||||||||| ||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||| |
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| T |
15535927 |
caacaatttcaatatttccagcagcagcagcaataaagaaagcagtgtttccgttcatatctagcaattctatatctttgtcatcaagcatcttcaataa |
15536026 |
T |
|
| Q |
310 |
ctccttca |
317 |
Q |
| |
|
|||||||| |
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|
| T |
15536027 |
ctccttca |
15536034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 14 - 317
Target Start/End: Original strand, 15495393 - 15495696
Alignment:
| Q |
14 |
tacttaccatagatgcctgtgtagatacaagcaaagaacaataactcccagtccttctcttcaaagcaatgtatggtttcatcatatagatgccatgtca |
113 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||||| || |||||||| |||||||| |||| ||||||||||||||||| || |
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| T |
15495393 |
tacttaccatagatgccagtgtagatacaagcaaagaacaataattcccagtcattgtcttcaaaacaatgtattgttttatcatatagatgccatgcca |
15495492 |
T |
|
| Q |
114 |
ttttgtatcttccttgcaaagcagcatactgaataggagcacatccttttgcaccctttataattggtaacttggggtttattttcagcattaagtcaac |
213 |
Q |
| |
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||||||||||||||||||| ||||||| ||||||||||| | ||||| |||||| ||||||| ||||| | ||||||| ||||||||||||||||||| |
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| T |
15495493 |
ttttgtatcttccttgcaatgcagcattctgaataggagtatatcctaatgcacctcttataataggtaaatcggggtttcttttcagcattaagtcaac |
15495592 |
T |
|
| Q |
214 |
aattttcatgtttccagctgcagcagcaatnnnnnnngcagtgtttccgttcatatcttgcaatgttatatcattgtcatcaagcatcttcaatagctcc |
313 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||| || || ||||||||||| |||||||||||||| ||||||||||||||||||| |
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|
| T |
15495593 |
aattttcatgtttccaactgcagcagcaatacagaaagcagtgttaccattggcatcttgcaatgctatatcattgtcatgaagcatcttcaatagctcc |
15495692 |
T |
|
| Q |
314 |
ttca |
317 |
Q |
| |
|
|||| |
|
|
| T |
15495693 |
ttca |
15495696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 15646952 - 15647258
Alignment:
| Q |
11 |
taatacttaccatagatgcctgtgtagatacaagcaaagaacaataactcccagtccttctcttcaaagcaatgtatggtttcatcatatagatgccatg |
110 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||| | ||||||||||| ||||||||||||||||| |
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| T |
15646952 |
taatacttaccatagatgccagtgtagatacaagcaaagaacaataactcccagtcctcagcatcaaaacgatgtatggttttatcatatagatgccatg |
15647051 |
T |
|
| Q |
111 |
tcattttgtatcttccttgcaaagcagcatactgaataggagcacatccttttgcaccctttataattggtaacttggggtttattttcagcattaagtc |
210 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||| | |||||||| ||||| || | | ||||||| | ||| | | | ||||||||| |
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|
| T |
15647052 |
tcattttgcatcttccttgcagagcagcatactgaataggagtatatccttttccacccctttttacaggtaactgtgagttcctatctaacattaagtc |
15647151 |
T |
|
| Q |
211 |
aacaattttcatgtttccagctgcagcagcaatnnnnnnngcagtgtttccgttcatatcttgcaatgttatatcattgtcatcaagcatcttcaatagc |
310 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||||| | ||||||||||| || ||| |||||||||||||| ||||||| | |
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| T |
15647152 |
aacaatttccatgtttccagctgcagcagcaaagcaaaaagcagtgtttccgttgacatcttgcaatgctaaatctttgtcatcaagcatattcaataac |
15647251 |
T |
|
| Q |
311 |
tccttca |
317 |
Q |
| |
|
||||||| |
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|
| T |
15647252 |
tccttca |
15647258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 12 - 317
Target Start/End: Original strand, 15656272 - 15656577
Alignment:
| Q |
12 |
aatacttaccatagatgcctgtgtagatacaagcaaagaacaataactcccagtccttctcttcaaagcaatgtatggtttcatcatatagatgccatgt |
111 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||| | ||||||||| |||||||| |||||| |||||| |||||||||||||||||| |
|
|
| T |
15656272 |
aatacttaccgtagatgccagtgtagatacaagcaaagaacaacgaatcccagtccgcatcttcaaaacaatgtgtggttttatcatatagatgccatgt |
15656371 |
T |
|
| Q |
112 |
cattttgtatcttccttgcaaagcagcatactgaataggagcacatccttttgcaccctttataattggtaacttggggtttattttcagcattaagtca |
211 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||| | ||| ||| ||| || | | ||||| | | |||| | | || || ||||||| |
|
|
| T |
15656372 |
cattttgcatcttccttgcagagcagcatactgaataggagtatttccatttccacttctttttacaggtaattgtgagtttgtatccaacagtaagtca |
15656471 |
T |
|
| Q |
212 |
acaattttcatgtttccagctgcagcagcaatnnnnnnngcagtgtttccgttcatatcttgcaatgttatatcattgtcatcaagcatcttcaatagct |
311 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15656472 |
acaatttcaatgtttccagctgcagcagcaaagcaaaaagcagtgtttccgttcatatcttgcaatgttatatcattgtcatcaagcatcttcaatagct |
15656571 |
T |
|
| Q |
312 |
ccttca |
317 |
Q |
| |
|
|||||| |
|
|
| T |
15656572 |
ccttca |
15656577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 15608575 - 15608881
Alignment:
| Q |
11 |
taatacttaccatagatgcctgtgtagatacaagcaaagaacaataactcccagtccttctcttcaaagcaatgtatggtttcatcatatagatgccatg |
110 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||| ||| ||| || |||||| ||||||||||||||||| |
|
|
| T |
15608575 |
taatacttaccatagatgccagtgtagatacaagcaaagaacaataacttccagtcctcatcttgaaaacaaggtgtggttttatcatatagatgccatg |
15608674 |
T |
|
| Q |
111 |
tcattttgtatcttccttgcaaagcagcatactgaataggagcacatccttttgcaccctttataattggtaacttggggtttattttcagcattaagtc |
210 |
Q |
| |
|
||||||| |||||||||||| ||| |||||||||||||||| | |||| ||| || || || | | ||||| | | ||| | | || || |||||| |
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|
| T |
15608675 |
tcattttagatcttccttgcagagccgcatactgaataggagtatatccatttccagccctttttacaggtaattgtgagttcctatccaacagtaagtc |
15608774 |
T |
|
| Q |
211 |
aacaattttcatgtttccagctgcagcagcaatnnnnnnngcagtgtttccgttcatatcttgcaatgttatatcattgtcatcaagcatcttcaatagc |
310 |
Q |
| |
|
|||||||| |||||||||||||| |||||| || ||||||||| || |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15608775 |
aacaatttcaatgtttccagctgccgcagcatagcaaaaagcggtgtttccgatcttatcttgcaatgttatatcattctcatcaagcatcttcaatagc |
15608874 |
T |
|
| Q |
311 |
tccttca |
317 |
Q |
| |
|
||||||| |
|
|
| T |
15608875 |
tccttca |
15608881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 15626626 - 15626932
Alignment:
| Q |
11 |
taatacttaccatagatgcctgtgtagatacaagcaaagaacaataactcccagtccttctcttcaaagcaatgtatggtttcatcatatagatgccatg |
110 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| | |||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
15626626 |
taatacttaccatagatgccattgtggatacaagcaaagaacaataaatcccagtcatcatcttcaaaacaatgtatggttttctcatatagatgccatg |
15626725 |
T |
|
| Q |
111 |
tcattttgtatcttccttgcaaagcagcatactgaataggagcacatccttttgcaccctttataattggtaacttggggtttattttcagcattaagtc |
210 |
Q |
| |
|
|| |||| | ||||||||||||||||||||||||||||||| | |||||||| || || |||| | ||||| | | ||| | | || || |||||| |
|
|
| T |
15626726 |
tcgttttacaccttccttgcaaagcagcatactgaataggagtatatccttttccatcccttattacaggtaattgtgagttcctatccaacagtaagtc |
15626825 |
T |
|
| Q |
211 |
aacaattttcatgtttccagctgcagcagcaatnnnnnnngcagtgtttccgttcatatcttgcaatgttatatcattgtcatcaagcatcttcaatagc |
310 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||| | ||| |||||||||||||| || |||||| | |
|
|
| T |
15626826 |
aacaatttcaatgtttccagctgcagcagcaaagcaaaaagcagtgtttcctttcatatcttgcaacgctatgtcattgtcatcaagaatactcaataac |
15626925 |
T |
|
| Q |
311 |
tccttca |
317 |
Q |
| |
|
||||||| |
|
|
| T |
15626926 |
tccttca |
15626932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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