View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16965_low_2 (Length: 741)
Name: NF16965_low_2
Description: NF16965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16965_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 274 - 718
Target Start/End: Original strand, 39028054 - 39028494
Alignment:
| Q |
274 |
caattgaaatatgaacctgatgagatagaaagccaatgcaaacaggaaatttcacagcctcaaagtaacaacaacaatgtcacttcttctaatgatagaa |
373 |
Q |
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| T |
39028054 |
caattgaaatatgaacctgatgaggtagaaagccaatgcaaacaggaaaattcacagcctcaaagtaacaacaacaatgtcacttcttctaatgatagaa |
39028153 |
T |
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| Q |
374 |
ttactgatccaaagagagtcaaaaggtaattatcaaacacttctatatctacagataaaaattaaaacatgtaggaataggttgaaatttaaaacaannn |
473 |
Q |
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| T |
39028154 |
ttactgatccaaagagagtcaaaaggtaattatctaacacttctatatctatagataaaaattaaaacatgtaggaataggatgaaatttaaaacaattt |
39028253 |
T |
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| Q |
474 |
nnnnncttctaaagttcttgcataattcaatttttctaatagtatatttttatctatacatatgcttaattttgctaataaacttgctatgcccacatga |
573 |
Q |
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| T |
39028254 |
tttttcttctaaagttcttgcataattcaatttttctaatagtatatttttatctatacatatgcttaattttgctaataaacttgcaatgcccacatga |
39028353 |
T |
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| Q |
574 |
cataattttggagtacttcattattaattgtagattannnnnnnaagcatgattttgatattctagttgtaattgttgattagttttcatgcattgcact |
673 |
Q |
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| T |
39028354 |
cataattttggagtacttcatt----attgtagattatttttttaagcatgattttgatattctagttgtaattgttgattagttttcatgcatttctct |
39028449 |
T |
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| Q |
674 |
ttataattgaaatattgttgatcttggtttcttgaacttattata |
718 |
Q |
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| T |
39028450 |
ttataattgaaatattgttgatcttgttttcttgaacttattata |
39028494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 39027796 - 39027985
Alignment:
| Q |
16 |
tcagtcacattcttagaaacaccaatgctcgatggaaaacacgatggtaacaacaatgacaacgagttcgacaagtttgatgatgaacaatttttgtcca |
115 |
Q |
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| T |
39027796 |
tcagtcacattcttagaaacaccaatgctcgatggaaaacacgatggtaacaacaatgacaacgagttcgacaagtttgatgatgaacaatttttgtcca |
39027895 |
T |
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| Q |
116 |
tgttcagtgatgaaatatctggtgtcaataacatgccaccaacattgtcttcgtcgaacccttcgagtccttcagatcagaattttgtca |
205 |
Q |
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| T |
39027896 |
tgttcagtgatgaaatatctggtgtcaataacatgccaccaacattgtcttcgtcgaacccttcgagtccttcagatcagaattttgtca |
39027985 |
T |
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