View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16965_low_20 (Length: 306)
Name: NF16965_low_20
Description: NF16965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16965_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 52824119 - 52824403
Alignment:
| Q |
18 |
agaagcataataggtttcttctaagtgggatcaagctgcactctcctgctcctcctcccactcttcatgaagaaactggtaattttactatatctgagta |
117 |
Q |
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| T |
52824119 |
agaagcataataggtttcttctaagtgggatcaagctgcactctcctgctcctcctcccactcttcatgaagaaactggtaattttactatatctgagta |
52824218 |
T |
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| Q |
118 |
cttgataaacactatcccaggttggaagtttgaagatttccttgattccccttcttcttctgttccctctcatgaactacaacaccagaatcatatagtg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52824219 |
cttgataaacactatcccaggttggaagtttgaagatttccttgattccccttcttcttctgttccctctcatgaactacaacaccagaatcatatagtg |
52824318 |
T |
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| Q |
218 |
catgatgatgctaattatcatattcatgaggaaaatattctggtttctttctctagcgagagcatgcgtaggatctgtgctcctc |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52824319 |
catgatgatgctaattatcatattcatgaggaaaatattctggtttctttctctagcgagagcatgcgtaggatctgtgttcctc |
52824403 |
T |
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