View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16965_low_22 (Length: 290)
Name: NF16965_low_22
Description: NF16965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16965_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 15951345 - 15951069
Alignment:
| Q |
1 |
caaagcctacagcagctccaactaaaacattggcatctgccgcttcaactaaaaagggaaatccgcagtctttacctaggaggcaagttacttctagtgt |
100 |
Q |
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| T |
15951345 |
caaagcctacatcagctccaactaaaacattggcatctgccgcttcaactaaaaagggaaatccgcagtctttacctaggagacaagttacttctagtgt |
15951246 |
T |
|
| Q |
101 |
ggagaacaaaaaagttgcgaccagatctttgcacttgtctatgagcttaggtccaagtaatcctgagccagttcctcatactactgatccagttcctcgt |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
15951245 |
ggagaacaaaaaagctgcgaccagatctttgcacttgtcgatgagcttaggtccaagtaatcctgaaccagttcctcatactactgatccagttcctcat |
15951146 |
T |
|
| Q |
201 |
actatgaggaaatctctcattatggatagtatgggggataaggacatagtcaaacgagcatttaagactttccagaa |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15951145 |
actatgaggaaatctctcattatggatagtatgggggataaggacatagtcaaacgagcatttaagactttccagaa |
15951069 |
T |
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