View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16965_low_25 (Length: 252)
Name: NF16965_low_25
Description: NF16965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16965_low_25 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 52824614 - 52824374
Alignment:
| Q |
14 |
gaagagtgctagagagaaaatcagatgttgaatgaatgtatgaaatctaaagatatgtctatatcattgttgatatatatata--ataagatgtgacaat |
111 |
Q |
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| T |
52824614 |
gaagagtgctagagagaaaatcagatgttgaatgaatgtatgaaatctaaagatatgtctatatcattgttgatatatatatataataagatgtgacaat |
52824515 |
T |
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| Q |
112 |
gttaattgggagggattgttatctgtggaactgtgaaatcccccaaactgctgctgaaattgacggtgtttgatctgttatccattttttcagaataata |
211 |
Q |
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| T |
52824514 |
gttaattgggagggattgttatctgtggaactgtgaaatcccccaaactgctgctgaaattgacggtgtttgatctgttatccattttttcagaataata |
52824415 |
T |
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| Q |
212 |
cagtggtgcttgaggaacacagatcctacgcatgctctcgc |
252 |
Q |
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| T |
52824414 |
cagtggtgcttgaggaacacagatcctacgcatgctctcgc |
52824374 |
T |
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