View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16965_low_26 (Length: 252)
Name: NF16965_low_26
Description: NF16965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16965_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 52824740 - 52824937
Alignment:
| Q |
1 |
ctagtatgaatattttgtttgtttttgtgctcctctcaaccgggttgtgtacgttcttcataaatcagtgtaaaatattaaatatttctttcacattttg |
100 |
Q |
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| T |
52824740 |
ctagtatgaatattttgtttgtttttgtgctcctctcaaccgggttgtgtacgttcttcataaatcagtgtaaaatattaaatatgtctttcacattttg |
52824839 |
T |
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| Q |
101 |
taaataagatctttaattgaattaaataactcaacttgattgattaatttttgtttgcaacttgttaaaaggggtagtacgtcttgttaaatgggatt |
198 |
Q |
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| T |
52824840 |
taaataagatctttaattgaattaaataactcaacttgattgattaatttttgtttgcaacttgttaaaaggggtagtacatcttgttaaatgagatt |
52824937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 198 - 241
Target Start/End: Original strand, 52824960 - 52825003
Alignment:
| Q |
198 |
tcgtgagaaggtttccaaacacatgtatacatcccacaattcat |
241 |
Q |
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| T |
52824960 |
tcgtgagaaggtttccaaacacatgtatacatcccacaattcat |
52825003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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