View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16965_low_27 (Length: 248)

Name: NF16965_low_27
Description: NF16965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16965_low_27
NF16965_low_27
[»] chr4 (5 HSPs)
chr4 (1-220)||(41627703-41627922)
chr4 (128-212)||(7544568-7544654)
chr4 (128-173)||(20047586-20047632)
chr4 (143-184)||(48154921-48154962)
chr4 (132-175)||(47147528-47147572)
[»] chr7 (3 HSPs)
chr7 (128-170)||(45601627-45601670)
chr7 (127-184)||(29653620-29653678)
chr7 (127-170)||(43281981-43282025)
[»] chr6 (1 HSPs)
chr6 (128-169)||(10617323-10617365)
[»] chr2 (2 HSPs)
chr2 (128-173)||(19235069-19235115)
chr2 (128-171)||(43832249-43832293)
[»] chr8 (1 HSPs)
chr8 (128-183)||(2776337-2776393)
[»] chr1 (1 HSPs)
chr1 (128-183)||(15577569-15577625)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 41627922 - 41627703
Alignment:
Q  1 ataattttgtaacctaacaactcagttcatacacatggttaatgaagtgttaaatttgnnnnnnnnnactcaaataattaaacttgattaatagatatgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  41627922 ataattttgtaacctaacaactcagttcatacacatggttaatgaagtgttaaatttgtttttttttactcaaataattaaacttgattaatagatatgt 41627823  T
Q  101 aagatgtcataacttaaacatttatggtaagagaaaccattaagaagatctagagattaatgatttggatagatacatgatataaattatggcatatttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41627822 aagatgtcataacttaaacatttatggtaagagaaaccattaagaagatctagagattaatgatttggatagatacatgatataaattatggcatatttg 41627723  T
Q  201 atccatgtagcctactccat 220  Q
    ||||||||||||||||||||    
T  41627722 atccatgtagcctactccat 41627703  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 7544654 - 7544568
Alignment:
Q  128 taagagaaaccattaagaa-gatctagagattaatgatttggatagatacatgatataa-attatggcatatttgatccatgtagcc 212  Q
    |||||||||| |||||||| ||||||||||||||||| || ||| || | |||||| || ||||| ||  |||||||||||||||||    
T  7544654 taagagaaactattaagaaagatctagagattaatgagtttgatcgaaatatgatagaacattatagcgaatttgatccatgtagcc 7544568  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 173
Target Start/End: Original strand, 20047586 - 20047632
Alignment:
Q  128 taagagaaaccattaa-gaagatctagagattaatgatttggataga 173  Q
    |||||||||| ||||| |||||||||||||||||||| |||||||||    
T  20047586 taagagaaactattaaagaagatctagagattaatgagttggataga 20047632  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 48154962 - 48154921
Alignment:
Q  143 agaagatctagagattaatgatttggatagatacatgatata 184  Q
    |||| |||||||||||||||| ||||||||| ||||||||||    
T  48154962 agaaaatctagagattaatgagttggatagaaacatgatata 48154921  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 175
Target Start/End: Original strand, 47147528 - 47147572
Alignment:
Q  132 agaaaccattaagaa-gatctagagattaatgatttggatagata 175  Q
    |||||| |||||||| ||||||||||||||||| |||||||||||    
T  47147528 agaaactattaagaaagatctagagattaatgagttggatagata 47147572  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 45601627 - 45601670
Alignment:
Q  128 taagagaaaccattaagaa-gatctagagattaatgatttggat 170  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||    
T  45601627 taagagaaaccattaagaaagatctagagattaatgagttggat 45601670  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 29653678 - 29653620
Alignment:
Q  127 gtaagagaaaccattaagaa-gatctagagattaatgatttggatagatacatgatata 184  Q
    ||||||||||| |||||||| ||||||||||||||||| || |||||| | ||||||||    
T  29653678 gtaagagaaactattaagaaagatctagagattaatgagttagatagaaatatgatata 29653620  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 170
Target Start/End: Original strand, 43281981 - 43282025
Alignment:
Q  127 gtaagagaaaccattaag-aagatctagagattaatgatttggat 170  Q
    ||||||||||| |||||| ||||||||||||||||||| ||||||    
T  43281981 gtaagagaaacaattaagtaagatctagagattaatgagttggat 43282025  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 10617365 - 10617323
Alignment:
Q  128 taagagaaaccattaagaa-gatctagagattaatgatttgga 169  Q
    ||||||||||||||||||| ||||||||||||||||| |||||    
T  10617365 taagagaaaccattaagaaggatctagagattaatgagttgga 10617323  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 19235115 - 19235069
Alignment:
Q  128 taagagaaaccattaagaa-gatctagagattaatgatttggataga 173  Q
    |||||||||| ||| |||| |||||||||||||||||||||||||||    
T  19235115 taagagaaactattgagaaagatctagagattaatgatttggataga 19235069  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 171
Target Start/End: Original strand, 43832249 - 43832293
Alignment:
Q  128 taagagaaaccattaagaag-atctagagattaatgatttggata 171  Q
    |||||||||| ||||||||| |||||||||||||||| |||||||    
T  43832249 taagagaaactattaagaaggatctagagattaatgagttggata 43832293  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 2776393 - 2776337
Alignment:
Q  128 taagagaaaccattaagaa-gatctagagattaatgatttggatagatacatgatat 183  Q
    ||||| |||| |||||||| |||||||| |||||||||||||||||| | |||||||    
T  2776393 taagaaaaacgattaagaacgatctagatattaatgatttggatagagatatgatat 2776337  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 15577569 - 15577625
Alignment:
Q  128 taagagaaaccattaagaag-atctagagattaatgatttggatagatacatgatat 183  Q
    |||||||||| ||||||||| || ||||||||||||| ||||||||| | |||||||    
T  15577569 taagagaaactattaagaaggatatagagattaatgagttggatagagatatgatat 15577625  T

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