View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16965_low_28 (Length: 248)

Name: NF16965_low_28
Description: NF16965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16965_low_28
NF16965_low_28
[»] chr6 (4 HSPs)
chr6 (50-248)||(34437733-34437931)
chr6 (79-248)||(34444480-34444649)
chr6 (9-49)||(29229025-29229065)
chr6 (10-45)||(17828687-17828722)
[»] chr3 (4 HSPs)
chr3 (9-50)||(29586253-29586294)
chr3 (9-46)||(33632743-33632780)
chr3 (17-51)||(50463438-50463472)
chr3 (10-47)||(10474557-10474594)
[»] chr2 (2 HSPs)
chr2 (9-50)||(19908696-19908737)
chr2 (9-49)||(38397000-38397040)
[»] chr7 (1 HSPs)
chr7 (10-49)||(5464022-5464061)
[»] chr5 (2 HSPs)
chr5 (10-49)||(29340914-29340953)
chr5 (9-49)||(31546403-31546443)
[»] chr1 (4 HSPs)
chr1 (9-49)||(32618717-32618757)
chr1 (13-49)||(40988775-40988811)
chr1 (12-49)||(5047501-5047538)
chr1 (12-49)||(9651955-9651992)
[»] scaffold0121 (1 HSPs)
scaffold0121 (12-49)||(29681-29718)


Alignment Details
Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 50 - 248
Target Start/End: Complemental strand, 34437931 - 34437733
Alignment:
Q  50 ctagtatcatacatctttctagatgttacaacatgtcataccattgtctttggatgttggaagtacatcaagttgtcttactacataaatctccactgca 149  Q
    ||||| |||||||||||| |||||||||||||||||||||||||  ||||  |||||||||||| |||||||||||||||||||||||||||||||||||    
T  34437931 ctagtctcatacatctttttagatgttacaacatgtcataccatcttcttcagatgttggaagtgcatcaagttgtcttactacataaatctccactgca 34437832  T
Q  150 ttaagtataggttgaagcgttgaaccttcggttttttgtattgaaattcgatgttcatttgcgaccaacgacttcgaattaaacacagtgattgcttgc 248  Q
    |||||||||||| |||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34437831 ttaagtataggtggaagagttgaatcttcagttttttgtattgaaattcgatgttcatttgcgaccaacgacttcgaattaaacacagtggttgcttgc 34437733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 79 - 248
Target Start/End: Complemental strand, 34444649 - 34444480
Alignment:
Q  79 aacatgtcataccattgtctttggatgttggaagtacatcaagttgtcttactacataaatctccactgcattaagtataggttgaagcgttgaaccttc 178  Q
    ||||||||||||| |  ||||  |||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||  ||||    
T  34444649 aacatgtcataccgtcttcttcagatgttggaagtgcatcatgttgtcttactacataaatctccactgcattaagaataggtggaagcgttgagtcttc 34444550  T
Q  179 ggttttttgtattgaaattcgatgttcatttgcgaccaacgacttcgaattaaacacagtgattgcttgc 248  Q
     |||||| |||| |||||||||||||||||||| ||||||||||| ||||||||||||||| ||| ||||    
T  34444549 agtttttcgtatcgaaattcgatgttcatttgcaaccaacgactttgaattaaacacagtggttgattgc 34444480  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 29229065 - 29229025
Alignment:
Q  9 gatgaaatggagagaataataaatggagaggatcttaactc 49  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  29229065 gatgaaatcgagagaataataaatggagaggatcttaactc 29229025  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 17828687 - 17828722
Alignment:
Q  10 atgaaatggagagaataataaatggagaggatctta 45  Q
    ||||||||||||||||||||||||||||||||||||    
T  17828687 atgaaatggagagaataataaatggagaggatctta 17828722  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 29586294 - 29586253
Alignment:
Q  9 gatgaaatggagagaataataaatggagaggatcttaactcc 50  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  29586294 gatgaaatggagagaataataaatggagatgatcttaactcc 29586253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 33632780 - 33632743
Alignment:
Q  9 gatgaaatggagagaataataaatggagaggatcttaa 46  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33632780 gatgaaatggagagaataataaatggagaggatcttaa 33632743  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 50463438 - 50463472
Alignment:
Q  17 ggagagaataataaatggagaggatcttaactcct 51  Q
    |||||||||||||||||||||||||||||||||||    
T  50463438 ggagagaataataaatggagaggatcttaactcct 50463472  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 10474557 - 10474594
Alignment:
Q  10 atgaaatggagagaataataaatggagaggatcttaac 47  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  10474557 atgaaatggagagaataataaatggagagaatcttaac 10474594  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 19908737 - 19908696
Alignment:
Q  9 gatgaaatggagagaataataaatggagaggatcttaactcc 50  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  19908737 gatgaaatgaagagaataataaatggagaggatcttaactcc 19908696  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 38397040 - 38397000
Alignment:
Q  9 gatgaaatggagagaataataaatggagaggatcttaactc 49  Q
    |||||||||||||||| ||||||||||||  ||||||||||    
T  38397040 gatgaaatggagagaaaaataaatggagaatatcttaactc 38397000  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 5464022 - 5464061
Alignment:
Q  10 atgaaatggagagaataataaatggagaggatcttaactc 49  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  5464022 atgaaatggagagaataataaatggagagaatcttaactc 5464061  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 29340953 - 29340914
Alignment:
Q  10 atgaaatggagagaataataaatggagaggatcttaactc 49  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  29340953 atgaaatggagagaataataaatggagaagatcttaactc 29340914  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 31546443 - 31546403
Alignment:
Q  9 gatgaaatggagagaataataaatggagaggatcttaactc 49  Q
    |||||||| |||||||||||||||||||| |||||||||||    
T  31546443 gatgaaatagagagaataataaatggagatgatcttaactc 31546403  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 32618757 - 32618717
Alignment:
Q  9 gatgaaatggagagaataataaatggagaggatcttaactc 49  Q
    |||||||| ||||||||||||||||||||| ||||||||||    
T  32618757 gatgaaatagagagaataataaatggagagaatcttaactc 32618717  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 40988811 - 40988775
Alignment:
Q  13 aaatggagagaataataaatggagaggatcttaactc 49  Q
    |||| ||||||||||||||||||||||||||||||||    
T  40988811 aaatagagagaataataaatggagaggatcttaactc 40988775  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 5047501 - 5047538
Alignment:
Q  12 gaaatggagagaataataaatggagaggatcttaactc 49  Q
    |||||||||| | |||||||||||||||||||||||||    
T  5047501 gaaatggagatagtaataaatggagaggatcttaactc 5047538  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 9651992 - 9651955
Alignment:
Q  12 gaaatggagagaataataaatggagaggatcttaactc 49  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  9651992 gaaatggagagactaacaaatggagaggatcttaactc 9651955  T

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Target: scaffold0121 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 29681 - 29718
Alignment:
Q  12 gaaatggagagaataataaatggagaggatcttaactc 49  Q
    ||||||||||| || |||||||||||||||||||||||    
T  29681 gaaatggagaggatgataaatggagaggatcttaactc 29718  T

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