View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16965_low_29 (Length: 240)

Name: NF16965_low_29
Description: NF16965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16965_low_29
NF16965_low_29
[»] chr5 (12 HSPs)
chr5 (44-222)||(41366419-41366597)
chr5 (18-231)||(41332213-41332426)
chr5 (20-231)||(41328202-41328413)
chr5 (53-233)||(31225190-31225370)
chr5 (49-231)||(41316264-41316446)
chr5 (43-233)||(31188443-31188633)
chr5 (49-231)||(41324333-41324515)
chr5 (43-158)||(41369748-41369864)
chr5 (43-233)||(31178398-31178588)
chr5 (20-66)||(41322286-41322332)
chr5 (119-232)||(41337243-41337356)
chr5 (118-162)||(41431266-41431310)


Alignment Details
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 44 - 222
Target Start/End: Original strand, 41366419 - 41366597
Alignment:
Q  44 ttgcagatttgtatccttctattcaaatgcctcaaatgttgagtaggccaaagaacaaacttgcaaaacttcagagagagactgatatgatattgcaaga 143  Q
    ||||||||||||||||||||||| |||| | ||||||||| ||| |||||| ||| ||||||| ||||||||| ||||||||||||||||||||||||||    
T  41366419 ttgcagatttgtatccttctattaaaattcttcaaatgttaagttggccaaggaaaaaacttgaaaaacttcatagagagactgatatgatattgcaaga 41366518  T
Q  144 catcatcgatgatcataaacgtagtaacaaggaaacgagcaaggataatgacttagtagatgttcttctcaagattcaa 222  Q
     |||||||||||||| ||| ||||| ||||| || | || ||| || ||||  ||||||||||||||||||||||||||    
T  41366519 gatcatcgatgatcacaaaagtagtcacaagaaagctaggaagaatgatgatctagtagatgttcttctcaagattcaa 41366597  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 41332213 - 41332426
Alignment:
Q  18 attggtactattaggaggatttgaaattgcagatttgtatccttctattcaaatgcctcaaatgttgagtaggccaaagaacaaacttgcaaaacttcag 117  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||    ||||||||   |||| |||| | | |||| ||||     
T  41332213 attggtgctattaggaggatttgaaattgcagatttgtatccttctattaaaatgcttcaatgcatgagtagggagaagaccaaaatggaaaaaattcat 41332312  T
Q  118 agagagactgatatgatattgcaagacatcatcgatgatcataaacgtagtaacaaggaaacgagcaaggataatgacttagtagatgttcttctcaaga 217  Q
    ||||||  |||||||||| |||||||||||||||| ||||| | | | | | |||||||| | ||||| ||| | ||  |||||||||||||||||||||    
T  41332313 agagagcttgatatgataatgcaagacatcatcgacgatcacagaagcattcacaaggaagcaagcaacgatgaagatctagtagatgttcttctcaaga 41332412  T
Q  218 ttcaaaaggaaaat 231  Q
    ||||| ||||||||    
T  41332413 ttcaacaggaaaat 41332426  T

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Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 41328202 - 41328413
Alignment:
Q  20 tggtactattaggaggatttgaaattgcagatttgtatccttctattcaaatgcctcaaatgttgagtaggccaaagaacaaacttgcaaaacttcagag 119  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||| || ||| ||||  | ||| ||||   |||| |||| | | ||||||||| |     
T  41328202 tggtgctattaggaagatttgaaattgcagatttgtatccttctattaaattgcttcaatggatgactagggagaagaccaaaatggaaaaacttcatac 41328301  T
Q  120 agagactgatatgatattgcaagacatcatcgatgatcataaacgtagtaacaaggaaacgagcaaggataatgacttagtagatgttcttctcaagatt 219  Q
    ||||| ||||||||||   |||||||||||||| ||||| | | ||| | |||||||| | ||||| ||| | ||  |||||||||||||||||||||||    
T  41328302 agagattgatatgatagcacaagacatcatcgacgatcacagaagtattcacaaggaagcaagcaatgatgaagatctagtagatgttcttctcaagatt 41328401  T
Q  220 caaaaggaaaat 231  Q
    ||| ||||||||    
T  41328402 caacaggaaaat 41328413  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 233
Target Start/End: Original strand, 31225190 - 31225370
Alignment:
Q  53 tgtatccttctattcaaatgcctcaaatgttgagtaggccaaagaacaaacttgcaaaacttcagagagagactgatatgatattgcaagacatcatcga 152  Q
    |||||||||||||  |||||| ||||  | |||||||| | |||| |||| ||| ||| ||||| | ||||| |||||||||||||||||| ||||||||    
T  31225190 tgtatccttctataaaaatgcttcaatgggtgagtagggcgaagaccaaagttgaaaagcttcataaagagattgatatgatattgcaagatatcatcga 31225289  T
Q  153 tgatcataaacgtagtaacaaggaaacgagcaaggataatgacttagtagatgttcttctcaagattcaaaaggaaaatga 233  Q
    ||||||||||   | | ||||||||   ||||||||| | ||  |||| |||  |||||||||||| ||| ||||||||||    
T  31225290 tgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatactcttctcaagatacaacaggaaaatga 31225370  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 231
Target Start/End: Original strand, 41316264 - 41316446
Alignment:
Q  49 gatttgtatccttctattcaaatgcctcaaatgttgagtaggccaaagaacaaacttgcaaaacttcagagagagactgatatgatattgcaagacatca 148  Q
    ||||||| |||||||||| || ||| ||||   ||||||||  | |||| |||| | | ||||||||| | ||||  |||||||| ||||||||||||||    
T  41316264 gatttgtttccttctattaaattgcttcaatgcttgagtagagcgaagaccaaaatggaaaaacttcacaaagagcttgatatgacattgcaagacatca 41316363  T
Q  149 tcgatgatcataaacgtagtaacaaggaaacgagcaaggataatgacttagtagatgttcttctcaagattcaaaaggaaaat 231  Q
    |||| ||||| ||| | | | ||||||||   ||||| ||| | ||  |||||||||||||||||||||||||| ||||||||    
T  41316364 tcgacgatcacaaaagcattcacaaggaagaaagcaatgatgaagatctagtagatgttcttctcaagattcaacaggaaaat 41316446  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 233
Target Start/End: Complemental strand, 31188633 - 31188443
Alignment:
Q  43 attgcagatttgtatccttctattcaaatgcctcaaatgttgagtaggccaaagaacaaacttgcaaaacttcagagagagactgatatgatattgcaag 142  Q
    ||||| ||| ||||||||||| || |||||  ||||  | |||||||| | ||||  ||| ||| ||| ||||| | ||||| |||||||||||||||||    
T  31188633 attgctgatgtgtatccttctgttaaaatgtttcaatgggtgagtagggcgaagacgaaagttgaaaagcttcataaagagattgatatgatattgcaag 31188534  T
Q  143 acatcatcgatgatcataaacgtagtaacaaggaaacgagcaaggataatgacttagtagatgttcttctcaagattcaaaaggaaaatga 233  Q
    | ||||||| ||||||||||   | | ||||||||   ||||||||| | ||  |||| |||  |||||||||||||||| ||||||||||    
T  31188533 atatcatcgttgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatactcttctcaagattcaacaggaaaatga 31188443  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 231
Target Start/End: Original strand, 41324333 - 41324515
Alignment:
Q  49 gatttgtatccttctattcaaatgcctcaaatgttgagtaggccaaagaacaaacttgcaaaacttcagagagagactgatatgatattgcaagacatca 148  Q
    |||||||||||||||||| || ||| ||||    |||||||| | |||  |||| | | ||||||||| | ||||| ||||||||||||||||||||| |    
T  41324333 gatttgtatccttctattaaattgcttcaatgcgtgagtagggcgaaggccaaaatggaaaaacttcacaaagagattgatatgatattgcaagacatta 41324432  T
Q  149 tcgatgatcataaacgtagtaacaaggaaacgagcaaggataatgacttagtagatgttcttctcaagattcaaaaggaaaat 231  Q
    |||| ||||| ||| | | | ||||||||   ||||| ||  |  |  |||||||||||||||||||||||||| ||||||||    
T  41324433 tcgacgatcacaaaagcattcacaaggaagatagcaatgaagaatatctagtagatgttcttctcaagattcaacaggaaaat 41324515  T

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Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 158
Target Start/End: Original strand, 41369748 - 41369864
Alignment:
Q  43 attgcagatttgtatccttctattcaaatgcctcaaatgttgagtaggccaaagaacaaacttgcaaaacttcagagagagac-tgatatgatattgcaa 141  Q
    ||||| |||||||||||||||||| |||| | ||||| | | |||||| |||||| |||| | | ||||||||||||| || | |||||| |||||||||    
T  41369748 attgctgatttgtatccttctattaaaatacttcaaagggtaagtagggcaaagaccaaaatggaaaaacttcagagaaaggcatgatattatattgcaa 41369847  T
Q  142 gacatcatcgatgatca 158  Q
    || |||||| |||||||    
T  41369848 gatatcatcaatgatca 41369864  T

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Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 233
Target Start/End: Complemental strand, 31178588 - 31178398
Alignment:
Q  43 attgcagatttgtatccttctattcaaatgcctcaaatgttgagtaggccaaagaacaaacttgcaaaacttcagagagagactgatatgatattgcaag 142  Q
    ||||| ||| |||||||||||||| |||||| ||||  | ||||| ||   |||| |||| ||| |||  |||| | ||||| |||||||||||||||||    
T  31178588 attgctgatgtgtatccttctattaaaatgcttcaacgggtgagtggggtgaagaccaaatttgaaaagtttcataaagagattgatatgatattgcaag 31178489  T
Q  143 acatcatcgatgatcataaacgtagtaacaaggaaacgagcaaggataatgacttagtagatgttcttctcaagattcaaaaggaaaatga 233  Q
    | ||| ||||||||||||||   | | ||||||||   ||||||||| | ||  |||| ||||  ||| ||||||||||| ||||||||||    
T  31178488 atatcgtcgatgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatgcacttatcaagattcaacaggaaaatga 31178398  T

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Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 41322286 - 41322332
Alignment:
Q  20 tggtactattaggaggatttgaaattgcagatttgtatccttctatt 66  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||    
T  41322286 tggtgctattaggaagatttgaaattgcagatttgtatccttctatt 41322332  T

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Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 232
Target Start/End: Original strand, 41337243 - 41337356
Alignment:
Q  119 gagagactgatatgatattgcaagacatcatcgatgatcataaacgtagtaacaaggaaacgagcaaggataatgacttagtagatgttcttctcaagat 218  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| |   | | |||   |||| ||||||||| | ||| |||| ||||||||||||||| |    
T  41337243 gagagattgataggatattgcaagacatcatcaatgatcatagaaacaatcacagtaaaacaagcaaggatgaagacctagttgatgttcttctcaaggt 41337342  T
Q  219 tcaaaaggaaaatg 232  Q
    |||| | |||||||    
T  41337343 tcaacatgaaaatg 41337356  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 41431266 - 41431310
Alignment:
Q  118 agagagactgatatgatattgcaagacatcatcgatgatcataaa 162  Q
    ||||| ||||||| ||||||||||||||||||| |||||||||||    
T  41431266 agagaaactgatacgatattgcaagacatcatcaatgatcataaa 41431310  T

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