View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16965_low_32 (Length: 212)

Name: NF16965_low_32
Description: NF16965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16965_low_32
NF16965_low_32
[»] chr2 (3 HSPs)
chr2 (1-212)||(19281011-19281223)
chr2 (4-209)||(19276915-19277120)
chr2 (1-209)||(19286898-19287105)


Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 19281223 - 19281011
Alignment:
Q  1 tatgttatgatccactttatttctctattacttattacaagaaatgttcgcggtaaaccatttttcattcatttaaaattttcttctttactacgaacat 100  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19281223 tatgtgatgatccactttatttctctattacttattacaacaaatgttcgcggtaaaccatttttcattcatttaaaattttcttctttactacgaacat 19281124  T
Q  101 aatattttatccatgttaagtagtaacatgcttatattctcatt-ttttattacagcatatgatgattgttataatcatgctgaatgtacgaacaaaatt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19281123 aatattttatccatgttaagtagtaacatgcttatattctcatttttttattacagcatatgatgattgttataatcatactgaatgtacgaacaaaatt 19281024  T
Q  200 aagtgtgtgcctc 212  Q
    |||||||||||||    
T  19281023 aagtgtgtgcctc 19281011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 4 - 209
Target Start/End: Complemental strand, 19277120 - 19276915
Alignment:
Q  4 gttatgatccactttatttctctattacttattacaagaaatgttcgcggtaaaccatttttcattcatttaaaattttcttctttactacgaacataat 103  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  19277120 gttatgatccactttatttctctattacttattacaacaaatgttcacggtaaaccatttttcattcatttaaaattttcttctttactagtaacataat 19277021  T
Q  104 attttatccatgttaagtagtaacatgcttatattctcattttttattacagcatatgatgattgttataatcatgctgaatgtacgaacaaaattaagt 203  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||  | |||||||||||    
T  19277020 attttatccatgttaagtagtaacatgcttatattctctttttctattacagcatatgatgattgttataatcatgctgaatgtaaaaccaaaattaagt 19276921  T
Q  204 gtgtgc 209  Q
    ||||||    
T  19276920 gtgtgc 19276915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 19287105 - 19286898
Alignment:
Q  1 tatgttatgatccactttatttctctattacttattacaagaaatgttcgcggtaaaccatttttcattcatttaaaattttcttctttactacgaacat 100  Q
    |||||| ||||| |||||||||||||||| ||| ||| ||   ||||||  |||||| |||||||||||||||||||| ||| ||||||||  | |||||    
T  19287105 tatgttttgatctactttatttctctatttcttgttataa---atgttcaaggtaaatcatttttcattcatttaaaacttttttctttacgtctaacat 19287009  T
Q  101 aatattttatccatgttaagta--gtaacatgcttatattctcattttttattacagcatatgatgattgttataatcatgctgaatgtacgaacaaaat 198  Q
    ||| |  |||||  ||| ||||   |||||| || || ||||| |||| | ||||||||| |   |||||| | ||||||| ||| ||||  ||||||||    
T  19287008 aatctcatatccccgtttagtaacataacattctaatgttctctttttctcttacagcatttttcgattgtgagaatcatgatgactgtaaaaacaaaat 19286909  T
Q  199 taagtgtgtgc 209  Q
    ||||| |||||    
T  19286908 taagtatgtgc 19286898  T

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