View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16965_low_5 (Length: 512)
Name: NF16965_low_5
Description: NF16965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16965_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 39 - 496
Target Start/End: Complemental strand, 4919613 - 4919154
Alignment:
| Q |
39 |
tttttatttacattataggacggagtgatccattgaccgtgtccacacttttctatgcgggacttttgaaccagaagtcttcttagcaaacgcactttag |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4919613 |
tttttatttacattataggacggagtgatccattgaccgtgtccacacttttctatgcgggacttttgaaccagaagtcttcttagcaaacgcactttag |
4919514 |
T |
|
| Q |
139 |
aattgagaac----agcatagtactgaacgcctagcaaacaaatcgctgctcagctcataccacaaacagcaaacaatctgaggaataacacgaatttaa |
234 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4919513 |
aattgagaaccgcatgcatagtactgaacgcctagcaaacaaatcgctgctcagctcataccacaaacagcaaacaatctgaggaataacacgaatttaa |
4919414 |
T |
|
| Q |
235 |
ggtgatttgattctttcatatattttctttaatctctttccatattccataagaatttactattacaaagtcaacgctggtatatgcttcttatggtggt |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4919413 |
ggtgatttgattctttcatatattttctttaatctctttccatattccataaaaatttactattacaaagtcaacgctggtatatgcttcttatg----- |
4919319 |
T |
|
| Q |
335 |
gtggaatattgttttaactgatttttgtact---tgatgtttcaaatttaatttcacgtgctcagttttacttttatctccatatttcaattttaattgt |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4919318 |
gtggaatattgttttaactgatttttgtacttgatgatgtttcaaatttaattcaatgtgctcagttttacttttatctccatatttcaagtttaattgt |
4919219 |
T |
|
| Q |
432 |
aaagaaatctgttttttagaatggaacaatttttgttgccttctttcagcagccagcaatatata |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4919218 |
aaagaaatctgttttttagaatggaacaatttttgttgtcttctttcagcagccagcaatatata |
4919154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 28451844 - 28451800
Alignment:
| Q |
213 |
ctgaggaataacacgaatttaaggtgatttgattctttcatatat |
257 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
28451844 |
ctgaggaagaacccgaatttaaggtgatttgcttctttcatatat |
28451800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University