View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16965_low_6 (Length: 512)
Name: NF16965_low_6
Description: NF16965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16965_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 19 - 502
Target Start/End: Original strand, 35611624 - 35612107
Alignment:
| Q |
19 |
taatcacccttccatataaagtttgatagaccacttaaagtggtgagttcttaatattttttaggacggtcagaaataaaacttgacaaataattgtttc |
118 |
Q |
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| T |
35611624 |
taatcacccttccatataaagtttgatagaccacttaaagtggcgagttcttaatattttttaggacggtcggaaataaaacttgacaaataattgtttc |
35611723 |
T |
|
| Q |
119 |
agccagggatcaaactcaaatatacctaacctattcgactttaactgaaacattttaaccagttgcctcaaccattttgcttccagggttggggaaaaac |
218 |
Q |
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| T |
35611724 |
agccagggatcaaactcaaatatacctaacctattcgactttaactgaaacattttaaccagttgccttgaccattttgcttctagggttggggaaaaac |
35611823 |
T |
|
| Q |
219 |
aattgttttaggggtggacaagccaggagctaggttgagcctcagttcaagtgaggtccttcatgatgggaaaagccttatgggatctgtgtatggagga |
318 |
Q |
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| T |
35611824 |
aattgttttaggggtggacaagccaggagctaggttgagcctcagttctagtgaggtccttcatgatgggaaaagccttatgggatctgtgtatggagga |
35611923 |
T |
|
| Q |
319 |
ctcaaacccaaatctcatgtaccaattctactcaaacgttacatggacaaggtgcaataatattaagttccttttattttatttttggactattatactc |
418 |
Q |
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| T |
35611924 |
ctcaaacccaaatctcatgtaccgattctacttaaacgttacatggacaaggtgcaataatattaagttccttttattttatttttggactattatactc |
35612023 |
T |
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| Q |
419 |
aatagtaaaataataatcaagtgaaaaacatgaaagatcaaatgatttgtgacattttcaatgtgttaaagttttggccctttg |
502 |
Q |
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| T |
35612024 |
aatagtaaaataataatcaagtgaaaaacatgaaagatcaaatgatttgtgacattttcaatgtgttaaagttttggccctttg |
35612107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 202 - 371
Target Start/End: Original strand, 35616052 - 35616221
Alignment:
| Q |
202 |
cagggttggggaaaaacaattgttttaggggtggacaagccaggagctaggttgagcctcagttcaagtgaggtccttcatgatgggaaaagccttatgg |
301 |
Q |
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||||||||||||||||||||||| ||||| ||||||| |||||| | || | |||||||| | |||||||||||||||| |||||| | || || |
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| T |
35616052 |
cagggttggggaaaaacaattgtcttaggactggacaaaccaggatccagaataagcctcagctgtagtgaggtccttcatggtgggaagacaattcagg |
35616151 |
T |
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| Q |
302 |
gatctgtgtatggaggactcaaacccaaatctcatgtaccaattctactcaaacgttacatggacaaggt |
371 |
Q |
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| T |
35616152 |
gaaatttatttggaggactcaaacctaagtctcatgtatccattctactcaaaagatacatggacaaggt |
35616221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 193 - 373
Target Start/End: Complemental strand, 38027777 - 38027597
Alignment:
| Q |
193 |
ttttgcttccagggttggggaaaaacaattgttttaggggtggacaagccaggagctaggttgagcctcagttcaagtgaggtccttcatgatgggaaaa |
292 |
Q |
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||||| || ||||||||||||||||||||| | ||||| ||||||||||||||| ||| |||||| ||| | | ||| |||||| | | ||||| | |
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| T |
38027777 |
ttttgatttcagggttggggaaaaacaattatgttaggagtggacaagccaggatctaagttgagtatcaatagtactgacgtcctttttcaagggaaga |
38027678 |
T |
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| Q |
293 |
gccttatgggatctgtgtatggaggactcaaacccaaatctcatgtaccaattctactcaaacgttacatggacaaggtgc |
373 |
Q |
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|||||||| ||| | | |||||||||||||||||| ||| ||||||| ||||| | ||||| |||||||||||||||| |
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| T |
38027677 |
ctcttatggggtctatatttggaggactcaaacccaagtctgatgtacccattctttttaaacgctacatggacaaggtgc |
38027597 |
T |
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