View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16965_low_8 (Length: 423)
Name: NF16965_low_8
Description: NF16965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16965_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 13231554 - 13231945
Alignment:
| Q |
18 |
caagtggtgctggaaaatcaactttattggatggacttgctgggagaattgcaagtgggagtcttaaaggaaaagtttcattggatggaattagtgtgaa |
117 |
Q |
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| T |
13231554 |
caagtggtgctggaaaatcaactttattggatggacttgctgggagaattgcaagtgggagtcttaaaggaaaagtttcattggatggaaatagtgtgaa |
13231653 |
T |
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| Q |
118 |
tgcaagcttgattaaaagaacttctgcttatattatgcaagaagataggctttttcctatgcttaccgtctatgagactttgatgtttgctgctgatttc |
217 |
Q |
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| T |
13231654 |
tgcaagcttgattaaaagaacttctgcttatattatgcaagaagataggctttttcctatgcttactgtctatgagactttgatgtttgctgctgatttc |
13231753 |
T |
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| Q |
218 |
agattagggccactttcagccgttgataagaggcagagagttgagaagcttattgagcagcttggcttatcagtaagtggtttttatttcaaccttcaaa |
317 |
Q |
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| T |
13231754 |
agattagggccactttcagctgttgataagaggcagagagttgagaagcttattgagcagcttggcttatcagtaagtggtttttatttcaaccttcaaa |
13231853 |
T |
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| Q |
318 |
attatctcctccatgtactaatatctgtcactaactatatagacaagacaccttagattgaagtcgtgtctagtggctaacacgtgtctgtg |
409 |
Q |
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| T |
13231854 |
attatctcctccatgtactaatatctgtcactaactatatagacaagacaccttagattgaagtcgtgtctagtggctaccacgtgtctgtg |
13231945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 285 - 406
Target Start/End: Original strand, 13232059 - 13232178
Alignment:
| Q |
285 |
tatcagtaagtggtttttatttcaaccttcaaaattatc-tc-ctccatgtactaatatctgtcactaactatatagacaagacaccttagattgaagtc |
382 |
Q |
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| T |
13232059 |
tatcagtaagtgtttttt--ttcaaccttcaaaattatgatctctccatgtactaatat--gtcactaactatatacacaagacatcttagattgaagtc |
13232154 |
T |
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| Q |
383 |
gtgtctagtggctaacacgtgtct |
406 |
Q |
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| T |
13232155 |
gtgtctagtgtctaacacgtgtct |
13232178 |
T |
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