View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16965_low_9 (Length: 412)
Name: NF16965_low_9
Description: NF16965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16965_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 11 - 394
Target Start/End: Complemental strand, 41485782 - 41485404
Alignment:
| Q |
11 |
cagagaatgttagtgactaatttatcaaaaccaaatacacaataatattaagaagagaaatatcctaagcaagaaagtggatgnnnnnnnttctgtagac |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41485782 |
cagagaatgttagtgactaatttatcaaaaccaaata------actattattaagagaaatatcctaagcaagaaagtggatgaaaaaa-ttctgtagac |
41485690 |
T |
|
| Q |
111 |
atacataatgacagaattttgtacattagcacattttcacaaggtttcttgtataacccttctttttctatattcacgaaggtattactattgttgcctt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41485689 |
atacataatgacagaattttgtacattagcacattttcacagggtttcttgtataacccttctttttctatattcacgaaggtattactattgttgcctt |
41485590 |
T |
|
| Q |
211 |
caataactttccatcgtattgcagtatctatatagcctccatggttgatgttcttgggattaaatcaacttggttctctaatatgtaataaatattgtca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41485589 |
caataactttccatcgtattgcagtatctatatagcctccatggttgatgttcttgggattaaatcaacttggttctctaatatgtaataaatattgtca |
41485490 |
T |
|
| Q |
311 |
atctactgttaaatcgttaattgttgtttcccacacttcaccacaataaacatagcaagtagaaat--tccctgagagatgcacag |
394 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
41485489 |
atctactgttaaatcgttaattgttgtttccaacacttcaccataataaacatagcaagtagaaatcccccctgagagatgcacag |
41485404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 41482501 - 41482263
Alignment:
| Q |
11 |
cagagaatgttagtgactaatttatcaaaaccaaatacacaataatattaagaagagaaatatcctaagcaagaaagtggatgnnnnnnnttctgtagac |
110 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41482501 |
cagagaatgttactgactaatttatcaaaaccaaata------actattattaagagaaatatcctaagcaagaaagtggatgaaaaaaattctgtagac |
41482408 |
T |
|
| Q |
111 |
atacataatgacagaattttgtacattagcacattttcacaaggtttcttgtataacccttctttttctatattcacgaagg------tattacta-ttg |
203 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||| | ||||| |||||||| | | |
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| T |
41482407 |
atacataatgacagaattttgtacattagcacatattcacagggtttcttgtataacccttccttttctatatcaatgaaggccatactattactactgg |
41482308 |
T |
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| Q |
204 |
ttgccttcaataactttccatcgtattgcagtatctatatagcct |
248 |
Q |
| |
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|| ||||||||||||||||||| || ||||||| |||||||||| |
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| T |
41482307 |
tttccttcaataactttccatcctactgcagtaggtatatagcct |
41482263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 276 - 394
Target Start/End: Complemental strand, 41482258 - 41482138
Alignment:
| Q |
276 |
caacttggttctctaatatgtaataaatattgtcaatctactgttaaatcgttaattgttgtttcccacacttcaccacaataaacatagcaagtagaaa |
375 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41482258 |
caacttagttctctaatatgtaatagatattgtcaatctactgttaaatcgttaattgttgtttcccacacttcaccacaataaacatagcaagtagaaa |
41482159 |
T |
|
| Q |
376 |
t--tccctgagagatgcacag |
394 |
Q |
| |
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| ||||||||||||||||| |
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| T |
41482158 |
tcccccctgagagatgcacag |
41482138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 239 - 394
Target Start/End: Original strand, 45385559 - 45385712
Alignment:
| Q |
239 |
tatatagcctccatggttgatgttcttgggattaaatcaacttggttctctaatatgtaataaatattgtcaatctactgttaaatcgttaattgttgtt |
338 |
Q |
| |
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|||||| |||||||||| ||||| ||| || |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||| |
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| T |
45385559 |
tatatatcctccatggtcgatgtctctggcatcaaatcaacttggttctctaatatgta-taaatattgtcaatccactgttaaatcgttaattgctgtt |
45385657 |
T |
|
| Q |
339 |
tcccacacttcaccacaataaacatagcaagtagaaattccctgagagatgcacag |
394 |
Q |
| |
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||||||| ||||||| ||| |||| ||||||||||||||||||||||||||||||| |
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| T |
45385658 |
tcccacatttcaccagaat-aacaaagcaagtagaaattccctgagagatgcacag |
45385712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 45385325 - 45385393
Alignment:
| Q |
12 |
agagaatgttagtgactaatttatcaaaaccaaatacacaataatattaagaagagaaatatcctaagcaag |
83 |
Q |
| |
|
||||||||||| |||| ||||| | ||||||||||| |||||||||| |||||||||||| |||| |||| |
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| T |
45385325 |
agagaatgttactgacaaatttgtgaaaaccaaataaacaataatat---gaagagaaatatactaatcaag |
45385393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 331 - 394
Target Start/End: Original strand, 5736243 - 5736306
Alignment:
| Q |
331 |
ttgttgtttcccacacttcaccacaataaacatagcaagtagaaattccctgagagatgcacag |
394 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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|
| T |
5736243 |
ttgttgtttcccacacttcaccacaattaacatggcaagtagaaattccctgagagatgcacag |
5736306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 331 - 394
Target Start/End: Original strand, 5773355 - 5773418
Alignment:
| Q |
331 |
ttgttgtttcccacacttcaccacaataaacatagcaagtagaaattccctgagagatgcacag |
394 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
5773355 |
ttgttgtttcccacacttcaccacaattaacatggcaagtagaaattccctgagagatgcacag |
5773418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 394
Target Start/End: Original strand, 5697587 - 5697656
Alignment:
| Q |
328 |
taattgttgtttcccacacttcaccacaataaacatagcaagt---agaaattccctgagagatgcacag |
394 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||| |||||| |||||||||||||||||| ||||| |
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| T |
5697587 |
taattgttgtttcccacactttaccacaattaacatggcaagtagaagaaattccctgagagattcacag |
5697656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 20434878 - 20434953
Alignment:
| Q |
107 |
agacatacataatgacagaattttgtacattagcacattttcacaaggtttcttgtataacccttctttttctatat |
183 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||| |||||||||||||||||| |
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| T |
20434878 |
agacatacacaatgacagaattttgtacattagcacattgtcacatgg-ttcttgtatcacccttctttttctatat |
20434953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 339 - 385
Target Start/End: Original strand, 20434495 - 20434541
Alignment:
| Q |
339 |
tcccacacttcaccacaataaacatagcaagtagaaattccctgaga |
385 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
20434495 |
tcccacacttcaggacaataaacatagcaagtagaaattcccagaga |
20434541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 393
Target Start/End: Original strand, 20435055 - 20435091
Alignment:
| Q |
357 |
taaacatagcaagtagaaattccctgagagatgcaca |
393 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||| |
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|
| T |
20435055 |
taaacatagcaagtagaaattctctgagagatccaca |
20435091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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