View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16966_high_1 (Length: 548)

Name: NF16966_high_1
Description: NF16966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16966_high_1
NF16966_high_1
[»] chr3 (34 HSPs)
chr3 (24-543)||(19581314-19581847)
chr3 (309-538)||(19549158-19549387)
chr3 (315-538)||(19538989-19539216)
chr3 (354-543)||(19593459-19593648)
chr3 (312-521)||(19563421-19563634)
chr3 (333-543)||(19603632-19603842)
chr3 (309-430)||(18479233-18479354)
chr3 (16-303)||(19653883-19654184)
chr3 (310-512)||(19557181-19557384)
chr3 (312-430)||(19626157-19626274)
chr3 (309-430)||(32150895-32151017)
chr3 (336-529)||(19653528-19653723)
chr3 (14-303)||(19557497-19557792)
chr3 (85-305)||(19626390-19626613)
chr3 (27-166)||(19549641-19549775)
chr3 (189-303)||(32150617-32150731)
chr3 (16-81)||(18478778-18478843)
chr3 (300-430)||(19646657-19646788)
chr3 (361-513)||(19609555-19609705)
chr3 (324-430)||(19612269-19612375)
chr3 (245-305)||(19539339-19539399)
chr3 (16-125)||(19604254-19604355)
chr3 (33-303)||(18478868-18479143)
chr3 (248-303)||(19563808-19563863)
chr3 (248-305)||(19549502-19549559)
chr3 (256-303)||(19593835-19593882)
chr3 (24-71)||(19594049-19594096)
chr3 (31-138)||(19539509-19539624)
chr3 (236-302)||(19617608-19617674)
chr3 (503-538)||(18479389-18479424)
chr3 (352-515)||(19617208-19617373)
chr3 (37-73)||(19617903-19617939)
chr3 (42-137)||(32150477-32150574)
chr3 (96-136)||(19594014-19594054)
[»] chr6 (3 HSPs)
chr6 (315-538)||(18025102-18025325)
chr6 (189-293)||(18025432-18025536)
chr6 (16-74)||(18025650-18025703)
[»] chr7 (5 HSPs)
chr7 (322-430)||(21605006-21605114)
chr7 (324-516)||(21594229-21594420)
chr7 (324-430)||(21581836-21581942)
chr7 (328-407)||(21601493-21601569)
chr7 (444-516)||(21587317-21587389)


Alignment Details
Target: chr3 (Bit Score: 434; Significance: 0; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 24 - 543
Target Start/End: Complemental strand, 19581847 - 19581314
Alignment:
Q  24 ttcaaacatatataaataaaagctttggaggaaaatgtttcttatttagttcatgccatctatag--------------atataaatatttataatgatg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||| |||    
T  19581847 ttcaaacatatataaataaaagctttggaggaaaatgtttcttatttagttcatgccatctatagttaaacatatatagatataaatatttataataatg 19581748  T
Q  110 taatttatttgattacacacagcaacaagaatttcccggaatgtcagtacatactccactttgataccccgctgtgcgacaccttgcgtcgcaattagaa 209  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  19581747 taatttatttcattacacacagcaacaagaatttcccggaatgtcagtacatactccactttgataccccgctgtgcgacaccttgcgtcgcaattagga 19581648  T
Q  210 gggctatcacaaaacgaaggagaactgcagaaaaacaaacctggtgttgatcctgccacaaaaataaaattcacatattcaaaacgcatatttataaagc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19581647 gggctatcacaaaacgaaggagaactgcagaaaaacaaacctggtgttgatcctgccacaaaaataaaattcacatattcaaaacgcatatttataaagc 19581548  T
Q  310 cgaagtgcaagaaaaagaaatagaacttaaggttgaaagttcatatgtttcttacctgaagttagaaccaatgcaatgaataaaattcccaagagaaagt 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19581547 cgaagtgcaagaaaaagaaatagaacttaaggttgaaagttcatatgtttcttacctgaagttagaaccaatgcaatgaataaaattcccaagagaaagt 19581448  T
Q  410 accgggaaatgtgttttgccannnnnnngtgaaaattttatcttaggactctattattgcttgttctcgcagtatgcatagcaaacttcaacttcattat 509  Q
    || ||||||||||||||||||       ||||||||||||||||| ||||||||||||  ||||||||||| ||||||||||||||||||||||||||||    
T  19581447 actgggaaatgtgttttgccatttttttgtgaaaattttatcttaagactctattattttttgttctcgcaatatgcatagcaaacttcaacttcattat 19581348  T
Q  510 atagtactcatgatatgattttacctttgcttct 543  Q
    ||||||||||||||||||||||||||||||||||    
T  19581347 atagtactcatgatatgattttacctttgcttct 19581314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 309 - 538
Target Start/End: Complemental strand, 19549387 - 19549158
Alignment:
Q  309 ccgaagtgcaagaaaaagaaatagaacttaaggttgaaagttcatatgtttcttacctgaagttagaaccaatgcaatgaataaaattcccaagagaaag 408  Q
    ||||||||||||| || |||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||    
T  19549387 ccgaagtgcaagagaatgaaatagaacttaaggttcaaagttcgtatgtttcttacctgaagttagaaccaacgcaatgcataaaattcccaagagacag 19549288  T
Q  409 taccgggaaatgtgttttgccannnnnnngtgaaaattttatcttaggactctattattgcttgttctcgcagtatgcatagcaaacttcaacttcatta 508  Q
    ||| | ||||||||||||||||       ||||| ||||||| |||| ||||||||||   ||||||| | | |||| ||| |||||||||| |||||||    
T  19549287 tactgagaaatgtgttttgccatttttttgtgaagattttattttagaactctattatcttttgttcttgaaatatgaataacaaacttcaagttcatta 19549188  T
Q  509 tatagtactcatgatatgattttacctttg 538  Q
    ||||||||||||||||||||||||| ||||    
T  19549187 tatagtactcatgatatgattttacttttg 19549158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 315 - 538
Target Start/End: Complemental strand, 19539216 - 19538989
Alignment:
Q  315 tgcaagaaaaagaaatagaacttaaggttgaaagttcatatgtttcttacctgaagttagaaccaatgcaatgaataaaattcccaagagaaagtaccgg 414  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||| |||||||||| |||||| ||||| ||    
T  19539216 tgcaagaaaaagaaatagaacttaaggttcaaagttcatatgtttcttacctgaagctagaaccaacgcaatgcataaaattcctaagagacagtactgg 19539117  T
Q  415 gaaatgtgttttgccannnnnnngtgaaaa----ttttatcttaggactctattattgcttgttctcgcagtatgcatagcaaacttcaacttcattata 510  Q
     |||||||||||||||       ||||| |    ||||||||||| ||||||||||   ||||||||| | |||| ||| |||||||||| |||||||||    
T  19539116 aaaatgtgttttgccatttttttgtgaagaattcttttatcttagaactctattatcttttgttctcgtaatatgaataacaaacttcaagttcattata 19539017  T
Q  511 tagtactcatgatatgattttacctttg 538  Q
    ||||||||||||||||||||||||||||    
T  19539016 tagtactcatgatatgattttacctttg 19538989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 354 - 543
Target Start/End: Complemental strand, 19593648 - 19593459
Alignment:
Q  354 atgtttcttacctgaagttagaaccaatgcaatgaataaaattcccaagagaaagtaccgggaaatgtgttttgccannnnnnngtgaaaattttatctt 453  Q
    ||||||||||||||||| ||||||||| |||||| |||||||||| |||||||| ||  |||||||||||  |||||       |||||  |||||||      
T  19593648 atgtttcttacctgaagctagaaccaacgcaatgcataaaattcctaagagaaaatattgggaaatgtgtcctgccatttttttgtgaattttttatcca 19593549  T
Q  454 aggactctattattgcttgttctcgcagtatgcatagcaaacttcaacttcattatatagtactcatgatatgattttacctttgcttct 543  Q
    || |||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19593548 agaactctattattgtttgttctcgcaatatgtatagcaaacttcaacttcattatatagtactcatgatatgattttacctttgcttct 19593459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 312 - 521
Target Start/End: Complemental strand, 19563634 - 19563421
Alignment:
Q  312 aagtgcaagaaaaagaaatagaacttaaggttgaaagttcatatgtttcttacctgaagttagaaccaatgcaatgaataaaattcccaagagaaagtac 411  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||  ||||| ||||||||||||||||| ||||     
T  19563634 aagtgcaagaaaaagaaatagaacttaaggttcaaagttcatatgtttcttacctgaagctagaatcaacacaatgcataaaattcccaagagacagtat 19563535  T
Q  412 cgggaaatgtgttttgccannnnnnngtgaaaa----ttttatcttaggactctattattgcttgttctcgcagtatgcatagcaaacttcaacttcatt 507  Q
     ||||||||||||||||||       ||||| |    ||||||||||| ||||||||||   ||||||||| | |||| ||| |||||||||| ||||||    
T  19563534 tgggaaatgtgttttgccatttttttgtgaagaattcttttatcttagaactctattatcttttgttctcgtaatatgaataacaaacttcaagttcatt 19563435  T
Q  508 atatagtactcatg 521  Q
    ||||||||||||||    
T  19563434 atatagtactcatg 19563421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 333 - 543
Target Start/End: Complemental strand, 19603842 - 19603632
Alignment:
Q  333 aacttaaggttgaaagttcatatgtttcttacctgaagttagaaccaatgcaatgaataaaattcccaagagaaagtaccgggaaatgtgttttgccann 432  Q
    ||||| ||||| |||||||||||||||||||||  ||| |||||||||  ||||| ||||||||||||||||||| ||  | ||||||||||||||||      
T  19603842 aacttgaggttcaaagttcatatgtttcttacccaaagctagaaccaacacaatgcataaaattcccaagagaaaatattgcgaaatgtgttttgccatt 19603743  T
Q  433 nnnnngtgaaaattttatcttaggactctattattgcttgttctcgcagtatgcatagcaaacttcaacttcattatatagta-ctcatgatatgatttt 531  Q
         || ||||||||||||||| |||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||| | || || ||||||||    
T  19603742 tttt-gttaaaattttatcttagaactctattattgtttgttctcgcaatatgcataacaaacttcaacttcattatatagtaccccacgacatgatttt 19603644  T
Q  532 acctttgcttct 543  Q
    ||||||||||||    
T  19603643 acctttgcttct 19603632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 309 - 430
Target Start/End: Original strand, 18479233 - 18479354
Alignment:
Q  309 ccgaagtgcaagaaaaagaaatagaacttaaggttgaaagttcatatgtttcttacctgaagttagaaccaatgcaatgaataaaattcccaagagaaag 408  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||| | ||    
T  18479233 ccgaagtgcaagagaaagaaatagaacttaaggttgaaagttcatatgtttcttacctgaagctagaaccaacgcaatgcataaaattcccaagaaacag 18479332  T
Q  409 taccgggaaatgtgttttgcca 430  Q
    | | ||||||||||||||||||    
T  18479333 tgctgggaaatgtgttttgcca 18479354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 16 - 303
Target Start/End: Complemental strand, 19654184 - 19653883
Alignment:
Q  16 atatatgtttcaaacatatataaataaaagctttggaggaaaatgtttcttatttagttcatgccatctatag-----------atataaatatttataa 104  Q
    ||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||| ||| | ||| |||           ||||||||||||||||    
T  19654184 atatatgcttcaaacatatataaataaaagctttggagaaagatgtttcttatttagttgatgacgtctttagtaaatatttatatataaatatttataa 19654085  T
Q  105 tgatgtaatttatttgattacacacagcaacaaga-at--ttcccggaatgtcagtacatactccactttgataccccgctgtgcgacaccttgcgtcgc 201  Q
    | ||||||||||||| ||| ||||||||||||||| ||  ||||||||| ||||| ||||||||| |||  | ||||   |  ||| |||||||||||||    
T  19654084 taatgtaatttatttcattgcacacagcaacaagacatggttcccggaaagtcagaacatactcctcttaaaaacccgaatccgcggcaccttgcgtcgc 19653985  T
Q  202 aattagaagggctatcacaaaacgaaggagaactgcagaaaaacaaacctggtgttgatcctgccacaaaaataaaattcacatattcaaaacgcatatt 301  Q
    || ||  |  ||||||||||| |  |||| || |||||     ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19653984 aaataacaaagctatcacaaagcataggataaatgcagttgctcaaacttggtgttggtcctgccacaaaaataaaattcacatattcaaaacgcatatt 19653885  T
Q  302 ta 303  Q
    ||    
T  19653884 ta 19653883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 310 - 512
Target Start/End: Complemental strand, 19557384 - 19557181
Alignment:
Q  310 cgaagtgcaagaaaaagaaatagaacttaaggttgaaagttcatatgtttcttacctgaagttagaaccaatgcaatgaataaaattcccaagagaaagt 409  Q
    ||||||||| |||| ||||||  |||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||| | |    
T  19557384 cgaagtgcaggaaagagaaattaaacttaaggttgaaagttcatatgtttcttacctgaagctagaaccaaggcaatgtataaaattcccaagagacaat 19557285  T
Q  410 accgggaaatgtgttttgcca-nnnnnnngtgaaaattttatcttaggactctattattgcttgttctcgcagtatgcatagcaaacttcaacttcatta 508  Q
    |  |||||||| |||| | ||        ||||| |||||||||||| ||||||||||   ||||||||| | |||| ||| |||||||||| || ||||    
T  19557284 attgggaaatgggtttcgacattttttttgtgaagattttatcttagaactctattatcttttgttctcgtaatatgaataacaaacttcaagtttatta 19557185  T
Q  509 tata 512  Q
    ||||    
T  19557184 tata 19557181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 312 - 430
Target Start/End: Complemental strand, 19626274 - 19626157
Alignment:
Q  312 aagtgcaagaaaaagaaatagaacttaaggttgaaagttcatatgtttcttacctgaagttagaaccaatgcaatgaataaaattcccaagagaaagtac 411  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||| |||||||| |||| ||| ||||     
T  19626274 aagtgcaagaaaaagaaatagaacttaaggtttaaa-ttcatatgtttcttacctgaagttagaaccaacgcaatgcataaaattgccaatagacagtaa 19626176  T
Q  412 cgggaaatgtgttttgcca 430  Q
     | ||||||||||||||||    
T  19626175 tgagaaatgtgttttgcca 19626157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 309 - 430
Target Start/End: Original strand, 32150895 - 32151017
Alignment:
Q  309 ccgaagtgcaagaaaaagaaatagaacttaaggttgaaagttcatatgtttcttacctgaagtt-agaaccaatgcaatgaataaaattcccaagagaaa 407  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||  ||||||| |||||||| |||||| |||||||| |||||||| |    
T  32150895 ccgaagtacaagaaaaagaaatagaacttaaggttcaaagttcatatgtttcttaattgaagttaagaaccaacgcaatgcataaaattgccaagagaca 32150994  T
Q  408 gtaccgggaaatgtgttttgcca 430  Q
    ||||  |||||||||||||||||    
T  32150995 gtactcggaaatgtgttttgcca 32151017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 336 - 529
Target Start/End: Complemental strand, 19653723 - 19653528
Alignment:
Q  336 ttaaggttgaaagttcatatgtttcttacctgaagttagaaccaatgcaatgaataaaattcccaagagaaagtaccgggaaatgtgttttgccannnnn 435  Q
    |||||||| |||||||||||||||||||||| ||||||||||||| |||||| |||||||| |||||||| ||||| ||||||||||||||||||         
T  19653723 ttaaggttcaaagttcatatgtttcttacctaaagttagaaccaacgcaatgcataaaattgccaagagacagtactgggaaatgtgttttgccattttt 19653624  T
Q  436 nngtgaaaattttatcttaggactctattattgcttgttctcgcagtatgcatagcaaacttcaacttcattatat---agtactcatgatatgatt 529  Q
       |||| |||||||||||   |||||||||   ||||| ||||| ||||||||| ||||| ||| ||||||||||   || |||||||||||||||    
T  19653623 ta-tgaagattttatcttatagctctattatcttttgttttcgcaatatgcatagaaaactccaagttcattatatagcagaactcatgatatgatt 19653528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 14 - 303
Target Start/End: Complemental strand, 19557792 - 19557497
Alignment:
Q  14 caatatatgtttcaaacatatataaataaaagctttggaggaaaatgtttcttatttagttcatgccatct--------atagatataaatatttataat 105  Q
    ||||||||| ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| |        | | |||||||||||||||||    
T  19557792 caatatatgcttcaaacatatataa-taaaaactttggaggaagatgtttcttatttagttcatgccatatgtggttaaacatatataaatatttataat 19557694  T
Q  106 gatgtaatttatttgattacacacagcaacaagaatttcccggaatgtcagtacatactccactttgataccccgctgtgcgacaccttgcgtcgcaatt 205  Q
     ||||||||||||| |||   |||| ||||||| |  |  |||||  ||| |||||| ||| |||||||||  |  |  ||| ||||||| ||||||| |    
T  19557693 catgtaatttatttcatttagcacaacaacaagtaagtggcggaaactcaatacataatcctctttgatactgcattccgcggcaccttgtgtcgcaaat 19557594  T
Q  206 agaagggctatcacaaaacgaaggagaactgcagaaaaacaaacctggtgttgatcctgccacaaaaataaaattcacatattcaaaacgcatattta 303  Q
    ||   |||||||||||| || |||| ||  ||||  |  |||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||    
T  19557593 agcttggctatcacaaatcgtaggataatagcagtcactcaaacctggtgttggtcctgccac-agaataaaattcacatattcaaaacgcatattta 19557497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 85 - 305
Target Start/End: Complemental strand, 19626613 - 19626390
Alignment:
Q  85 atagatataaatatttataatgatgtaatttatttgattacacacagcaacaagaat---ttcccggaatgtcagtacatactccactttgataccccgc 181  Q
    ||||||||||||||||||||| ||||||||||||| || ||| |||||||||||| |   |||||  |||||||||||||||||| || ||| ||||       
T  19626613 atagatataaatatttataataatgtaatttatttcatgacatacagcaacaagattcggttccctcaatgtcagtacatactcctctgtgaaacccaat 19626514  T
Q  182 tgtgcgacaccttgcgtcgcaattagaagggctatcacaaaacgaaggagaactgcagaaaaacaaacctggtgttgatcctgccacaaaaataaaattc 281  Q
       ||| ||| |   ||||||||||  |  ||||||||||| ||||||| |   ||||  |  |||||||||||||| ||||||||||||||||||||||    
T  19626513 atcgcggcacttaaagtcgcaattatcatagctatcacaaagcgaaggaaattcgcagttactcaaacctggtgttggtcctgccacaaaaataaaattc 19626414  T
Q  282 acatattcaaaacgcatatttata 305  Q
    ||||||||||||||||||||||||    
T  19626413 acatattcaaaacgcatatttata 19626390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 27 - 166
Target Start/End: Complemental strand, 19549775 - 19549641
Alignment:
Q  27 aaacatatataaataaaagctttggaggaaaatgtttcttatttagttcatgccatctatagatataaatatttataatgatgtaatttatttgattaca 126  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||  |        ||||||||||||||||||||| ||||||||||||| ||||||    
T  19549775 aaacatatataaataaaagctttggaggaagatgtttcttatttagtaaa--------atagatataaatatttataataatgtaatttatttcattaca 19549684  T
Q  127 cacagcaacaag---aatttcccggaatgtcagtacatactcc 166  Q
     |||||||||||   |  |||||||||||||||||||||||||    
T  19549683 tacagcaacaagataaggttcccggaatgtcagtacatactcc 19549641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 189 - 303
Target Start/End: Original strand, 32150617 - 32150731
Alignment:
Q  189 caccttgcgtcgcaattagaagggctatcacaaaacgaaggagaactgcagaaaaacaaacctggtgttgatcctgccacaaaaataaaattcacatatt 288  Q
    |||||||||||||||||||   ||||||||||||  ||||||  |  |||||||  |||||||||||||| |||||||||||||||||||||||||| ||    
T  32150617 caccttgcgtcgcaattaggttggctatcacaaactgaaggacgatagcagaaactcaaacctggtgttggtcctgccacaaaaataaaattcacatttt 32150716  T
Q  289 caaaacgcatattta 303  Q
    |||||||||||||||    
T  32150717 caaaacgcatattta 32150731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 18478778 - 18478843
Alignment:
Q  16 atatatgtttcaaacatatataaataaaagctttggaggaaaatgtttcttatttagttcatgcca 81  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18478778 atatatgcttcaaacatatataaataaaagctttggaggaaaatgtttcttatttagttcatgcca 18478843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 300 - 430
Target Start/End: Complemental strand, 19646788 - 19646657
Alignment:
Q  300 tttataaagccgaagtgcaagaaaaagaaatagaactt-aaggttgaaagttcatatgtttcttacctgaagttagaaccaatgcaatgaataaaattcc 398  Q
    |||| ||| ||||||||||||||||||||||| ||||| ||| ||  |||||||||| |||||||||||||| ||||||||| |||||| |||||||| |    
T  19646788 tttacaaaaccgaagtgcaagaaaaagaaataaaactttaagattcgaagttcatatatttcttacctgaagctagaaccaacgcaatgcataaaattgc 19646689  T
Q  399 caagagaaagtaccgggaaatgtgttttgcca 430  Q
     |||||| ||||| || |||||| ||||||||    
T  19646688 taagagacagtactggaaaatgttttttgcca 19646657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 361 - 513
Target Start/End: Complemental strand, 19609705 - 19609555
Alignment:
Q  361 ttacctgaagttagaaccaatgcaatgaataaaattcccaagagaaagtaccgggaaatgtgttttgccannnnnnngtgaaaattttatcttaggactc 460  Q
    |||||| ||| |||||||||  ||||| ||||||||||||||||| | ||| ||||||||||||||||||       ||||| ||||||||||||  |||    
T  19609705 ttacctaaagctagaaccaacacaatgcataaaattcccaagagacaatactgggaaatgtgttttgccattttt--gtgaagattttatcttagagctc 19609608  T
Q  461 tattattgcttgttctcgcagtatgcatagcaaacttcaacttcattatatag 513  Q
    |||||||| ||||| ||||| |||||| ||||||||| || ||||||||||||    
T  19609607 tattattgtttgttttcgcaatatgcacagcaaacttaaagttcattatatag 19609555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 324 - 430
Target Start/End: Complemental strand, 19612375 - 19612269
Alignment:
Q  324 aagaaatagaacttaaggttgaaagttcatatgtttcttacctgaagttagaaccaatgcaatgaataaaattcccaagagaaagtaccgggaaatgtgt 423  Q
    |||||||| ||||||| |||||||||| ||||||||||||||||||| ||||||||| |||||| | ||||||||||| ||| | ||  |||||||||||    
T  19612375 aagaaatataacttaatgttgaaagtttatatgtttcttacctgaagctagaaccaacgcaatgcagaaaattcccaaaagacaatattgggaaatgtgt 19612276  T
Q  424 tttgcca 430  Q
    |||||||    
T  19612275 tttgcca 19612269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 19539399 - 19539339
Alignment:
Q  245 caaacctggtgttgatcctgccacaaaaataaaattcacatattcaaaacgcatatttata 305  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19539399 caaacctggtgttggtcctgccacaaaaataaaattcacatattcaaaacgcatatttata 19539339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 19604355 - 19604254
Alignment:
Q  16 atatatgtttcaaacatatataaataaaagctttggaggaaaatgtttcttatttagttcatgccatctatagatataaatatttataatgatgtaattt 115  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||  |        ||||||||||||||||||||| |||||||||    
T  19604355 atatatgcttcaaacatatataaataaaagctttggaggaagatgtttcttatttagtaaa--------atagatataaatatttataataatgtaattt 19604264  T
Q  116 atttgattac 125  Q
    |||| |||||    
T  19604263 atttcattac 19604254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 33 - 303
Target Start/End: Original strand, 18478868 - 18479143
Alignment:
Q  33 atataaataaaagctttggaggaaaatgtttcttatttagttcatgccatctatag----------atataaatatttataatgatgtaatttatttgat 122  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||| ||| |||          ||||||||||||||||| ||||||||||||| ||    
T  18478868 atataaataaaagctttggaggaagatgtttcttatttagttgatgccgtctttagtaaaaaatatatataaatatttataataatgtaatttatttcat 18478967  T
Q  123 tacacacagcaacaaga-at--ttcccggaatgtcagtacatactccactttgataccccgctgtgcgacaccttgcgtcgcaattagaagggctatcac 219  Q
         |||||||||||| ||  ||||   |||||||||||||||||| ||   | |||| |||| ||| ||||||  |||||||| |  |  ||||  ||    
T  18478968 -----acagcaacaagatatgcttccttcaatgtcagtacatactcctctgataaacccagctgcgcggcaccttaagtcgcaataaccaaagctaggac 18479062  T
Q  220 aaaacgaaggagaactgcagaaaaacaaacctggtgttgatcctgccacaaaaataaaattcacatattcaaaacgcatattta 303  Q
    |||||| |||| ||  ||||  | |   ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  18479063 aaaacgtaggataatagcagctata---acctggtgttggtcctgccaccaaaataaaattcacatattcaaaacgcatattta 18479143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 19563863 - 19563808
Alignment:
Q  248 acctggtgttgatcctgccacaaaaataaaattcacatattcaaaacgcatattta 303  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19563863 acctggtgttggtcctgccacaaaaataaaattcacatattcaaaacgcatattta 19563808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 19549559 - 19549502
Alignment:
Q  248 acctggtgttgatcctgccacaaaaataaaattcacatattcaaaacgcatatttata 305  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  19549559 acctggtgttggtcctgcaacaaaaataaaattcacatattcaaaacgcatatttata 19549502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 256 - 303
Target Start/End: Complemental strand, 19593882 - 19593835
Alignment:
Q  256 ttgatcctgccacaaaaataaaattcacatattcaaaacgcatattta 303  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19593882 ttgatcctgccacaaaaataaaattcacatatttaaaacgcatattta 19593835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 19594096 - 19594049
Alignment:
Q  24 ttcaaacatatataaataaaagctttggaggaaaatgtttcttattta 71  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19594096 ttcaaacatatataaataaaagctttggaggaagatgtttcttattta 19594049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 19539624 - 19539509
Alignment:
Q  31 atatataaataaaagctttggaggaaaatgtttcttatttagttcatgccatctatag--------atataaatatttataatgatgtaatttatttgat 122  Q
    |||||||||| ||||||||||||  | ||||||||||||||||| ||||  ||| |||        ||||||||||||||||| ||||||||||||| ||    
T  19539624 atatataaatcaaagctttggagagagatgtttcttatttagttgatgctgtctttagtaaaatatatataaatatttataataatgtaatttatttcat 19539525  T
Q  123 tacacacagcaacaag 138  Q
    |||| |||||||||||    
T  19539524 tacatacagcaacaag 19539509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 236 - 302
Target Start/End: Complemental strand, 19617674 - 19617608
Alignment:
Q  236 gcagaaaaacaaacctggtgttgatcctgccacaaaaataaaattcacatattcaaaacgcatattt 302  Q
    |||||||  |||| ||||||||| ||||||||||||||||||||||||| |||||| || |||||||    
T  19617674 gcagaaactcaaaactggtgttggtcctgccacaaaaataaaattcacaaattcaatactcatattt 19617608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 503 - 538
Target Start/End: Original strand, 18479389 - 18479424
Alignment:
Q  503 tcattatatagtactcatgatatgattttacctttg 538  Q
    ||||||||||||||||||||||||||||||||||||    
T  18479389 tcattatatagtactcatgatatgattttacctttg 18479424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 352 - 515
Target Start/End: Complemental strand, 19617373 - 19617208
Alignment:
Q  352 atatgtttcttacctgaagttagaaccaatgcaatgaataaaattcccaagagaaagtaccgggaaatgtgttttgccannnnnnngt---gaaaatttt 448  Q
    |||||||||||||| |||| ||||||||| |||||| |||||| ||| |||||||| ||  || |||| | ||||||||        |   ||| |||||    
T  19617373 atatgtttcttacccgaagctagaaccaacgcaatgcataaaactccaaagagaaaatattggaaaatatattttgccattttttttttttgaagatttt 19617274  T
Q  449 atcttaggactctattattgcttgttctcgcagtatgcatagcaaacttcaacttcattatatagta 515  Q
    ||||| | | | |||||| | ||||| ||||| ||||||||||||||||||| ||||||||||||||    
T  19617273 atctttg-agtttattatcgtttgttttcgcaatatgcatagcaaacttcaagttcattatatagta 19617208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 19617939 - 19617903
Alignment:
Q  37 aaataaaagctttggaggaaaatgtttcttatttagt 73  Q
    |||||||||||||||||||| ||||||||||||||||    
T  19617939 aaataaaagctttggaggaagatgtttcttatttagt 19617903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 137
Target Start/End: Original strand, 32150477 - 32150574
Alignment:
Q  42 aaagctttggaggaaaatgtttcttatttagttcatgccatctat---agatataaatatttataatgatgtaatttatttgattacacacagcaacaa 137  Q
    ||||||||||||||| ||||||||||||||||| |||     |||   | ||||||||||||||||| |||| |||||||| ||||| |||||||||||    
T  32150477 aaagctttggaggaagatgtttcttatttagttgatgtttattataacatatataaatatttataataatgt-atttatttcattactcacagcaacaa 32150574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 19594054 - 19594014
Alignment:
Q  96 tatttataatgatgtaatttatttgattacacacagcaaca 136  Q
    |||||||||| ||||||||||||| |||||||||| |||||    
T  19594054 tatttataataatgtaatttatttcattacacacaacaaca 19594014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 315 - 538
Target Start/End: Complemental strand, 18025325 - 18025102
Alignment:
Q  315 tgcaagaaaaagaaatagaacttaaggttgaaagttcatatgtttcttacctgaagttagaaccaatgcaatgaataaaattcccaagagaaagtaccgg 414  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||| |||||| |||||||| |||| ||| | ||  |     
T  18025325 tgcaagaaaaagaaatagaacctaaggttgaaagttcatatgtttcttacctgaggctagaaccaacgcaatgcataaaattgccaacagacaatattga 18025226  T
Q  415 gaaatgtgttttgccannnnnnngtgaaaattttatcttaggactctattattgcttgttctcgcagtatgcatagcaaacttcaacttcattatatagt 514  Q
    ||||| ||||||||||       ||||| |||||||||||| ||||||||||   |||||||| || |||| ||| ||||||| || |||||||||||||    
T  18025225 gaaatatgttttgccatttttttgtgaagattttatcttagaactctattatcttttgttctcccaatatgaataacaaactttaaattcattatatagt 18025126  T
Q  515 actcatgatatgattttacctttg 538  Q
    ||| |||||||||| || ||||||    
T  18025125 acttatgatatgatattgcctttg 18025102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 189 - 293
Target Start/End: Complemental strand, 18025536 - 18025432
Alignment:
Q  189 caccttgcgtcgcaattagaagggctatcacaaaacgaaggagaactgcagaaaaacaaacctggtgttgatcctgccacaaaaataaaattcacatatt 288  Q
    ||||||||||||||||||     |||||||||| | | | |||||  |||||||   ||||||||||||| |||||||||||||||||||||||||||||    
T  18025536 caccttgcgtcgcaattatcttcgctatcacaatatgtatgagaatggcagaaacttaaacctggtgttggtcctgccacaaaaataaaattcacatatt 18025437  T
Q  289 caaaa 293  Q
    |||||    
T  18025436 caaaa 18025432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 18025703 - 18025650
Alignment:
Q  16 atatatgtttcaaacatatataaataaaagctttggaggaaaatgtttcttatttagtt 74  Q
    ||||||| ||||||||||||||||||     |||||||||| |||||||||||||||||    
T  18025703 atatatgcttcaaacatatataaata-----tttggaggaagatgtttcttatttagtt 18025650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 322 - 430
Target Start/End: Complemental strand, 21605114 - 21605006
Alignment:
Q  322 aaaagaaatagaacttaaggttgaaagttcatatgtttcttacctgaagttagaaccaatgcaatgaataaaattcccaagagaaagtaccgggaaatgt 421  Q
    |||||||||||||||||||||| ||| || ||||||||||||||||||| | ||||||| |||||| | |||| |||||||||||| ||  |||||||||    
T  21605114 aaaagaaatagaacttaaggttcaaaattaatatgtttcttacctgaagcttgaaccaacgcaatgcacaaaagtcccaagagaaaatattgggaaatgt 21605015  T
Q  422 gttttgcca 430  Q
    | |||||||    
T  21605014 ggtttgcca 21605006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 516
Target Start/End: Original strand, 21594229 - 21594420
Alignment:
Q  324 aagaaatagaacttaaggttgaaagttcatatgtttcttacctgaagttagaaccaatgcaatgaataaaattcccaagagaaagtaccgggaaatgtgt 423  Q
    |||||||||||| |||| || ||| || ||| |||||||||| |||| ||||||||| |||||||| |||| | |||||| ||| ||  |||  || |||    
T  21594229 aagaaatagaacgtaagattaaaattttatacgtttcttacccgaagctagaaccaacgcaatgaacaaaagtgccaagaaaaaatattgggctatatgt 21594328  T
Q  424 tttgccannnnnnngtgaaaattttatcttaggactctattattgcttgttctcgcagtatgcatagcaaacttcaacttcattatatagtac 516  Q
    |||||||        || | |||||||||||| ||||||||||   ||||||||| | ||||||  |||||||||||  ||||||||||||||    
T  21594329 tttgccatttttct-tgtagattttatcttagaactctattatattttgttctcgtattatgcaatgcaaacttcaagctcattatatagtac 21594420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 324 - 430
Target Start/End: Complemental strand, 21581942 - 21581836
Alignment:
Q  324 aagaaatagaacttaaggttgaaagttcatatgtttcttacctgaagttagaaccaatgcaatgaataaaattcccaagagaaagtaccgggaaatgtgt 423  Q
    |||||||||||| ||||  | ||||||||||| |||||||||  |||||||  |||| |||||||| |||| ||||| |||||| ||  ||||||| |||    
T  21581942 aagaaatagaacgtaagaatcaaagttcatatatttcttacccaaagttagggccaacgcaatgaacaaaagtcccacgagaaaatattgggaaatatgt 21581843  T
Q  424 tttgcca 430  Q
    |||||||    
T  21581842 tttgcca 21581836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 328 - 407
Target Start/End: Complemental strand, 21601569 - 21601493
Alignment:
Q  328 aatagaacttaaggttgaaagttcatatgtttcttacctgaagttagaaccaatgcaatgaataaaattcccaagagaaa 407  Q
    |||||||||||||||| |||||||| |||   |||||| ||||  |||||||| |||||| |||||| ||||||||||||    
T  21601569 aatagaacttaaggttcaaagttcagatg---cttacccgaagccagaaccaacgcaatgcataaaagtcccaagagaaa 21601493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 516
Target Start/End: Original strand, 21587317 - 21587389
Alignment:
Q  444 attttatcttaggactctattattgcttgttctcgcagtatgcatagcaaacttcaacttcattatatagtac 516  Q
    |||||||||||| ||||||||||   ||||||| ||| ||||||| ||||||||| | || ||||||||||||    
T  21587317 attttatcttagaactctattatcttttgttcttgcattatgcattgcaaacttctagttgattatatagtac 21587389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University