View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16966_low_2 (Length: 435)

Name: NF16966_low_2
Description: NF16966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16966_low_2
NF16966_low_2
[»] chr8 (4 HSPs)
chr8 (18-316)||(41375621-41375919)
chr8 (331-421)||(41375498-41375588)
chr8 (345-404)||(10621383-10621442)
chr8 (331-401)||(30659984-30660054)
[»] chr7 (3 HSPs)
chr7 (331-404)||(44662457-44662530)
chr7 (331-401)||(46195949-46196019)
chr7 (332-404)||(6548707-6548778)
[»] chr2 (3 HSPs)
chr2 (331-404)||(24202178-24202251)
chr2 (332-372)||(38790090-38790130)
chr2 (358-395)||(40473543-40473580)
[»] chr6 (1 HSPs)
chr6 (343-395)||(7234002-7234054)
[»] chr3 (3 HSPs)
chr3 (333-404)||(9489505-9489576)
chr3 (345-395)||(27394544-27394594)
chr3 (343-395)||(40160772-40160824)
[»] chr1 (1 HSPs)
chr1 (348-404)||(32660858-32660914)


Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 41375919 - 41375621
Alignment:
Q  18 gtaagatccaaatcaatccgtttctcttacaaatgtttgccacctcttcatgtcaaaaagcttaaaaatccaatatgttttcatgatatgttcttcttct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41375919 gtaagatccaaatcaatccgtttctcttacaaatgtttgccacctcttcatgtcaaaaagcttaaaaatccaatatgttttcatgatatgttcttcttct 41375820  T
Q  118 ttggcatgaacagattcccaaccaggacgaaaatggatgaaaactgcaatatctatttgacagacgaggacgagaactcgatgaagatgagtgaaaggaa 217  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41375819 ttggcatgaacagattcccaaccaggacgaaaatggattaaaactgcaatatctatttgacagacgaggacgagaactcgatgaagatgagtgaaaggaa 41375720  T
Q  218 gggaaagactagtatctgatttcttgtgttaggggtttaaattnnnnnnnnnnnnnnnctaaatctaaactgttaattaaattcgacggctcatgttaa 316  Q
    ||| ||||||||  |||||||||||||||||||||||||||||               |||||||||||||||||||||||| ||||||||||||||||    
T  41375719 ggggaagactaggttctgatttcttgtgttaggggtttaaattaaaaaatgaaaaaaactaaatctaaactgttaattaaatccgacggctcatgttaa 41375621  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 331 - 421
Target Start/End: Complemental strand, 41375588 - 41375498
Alignment:
Q  331 tggagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgcaaatgaactaagctcaca 421  Q
    |||||||||| | |||||||||||||||||| ||||||||   ||||||||| | ||||| |||||||||| ||| ||| |||||||||||    
T  41375588 tggagaaattcactttaaaggtgaaatagtgaggtgtccggagttcaaaccccaacccctacatacataatacaagtgagctaagctcaca 41375498  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 404
Target Start/End: Original strand, 10621383 - 10621442
Alignment:
Q  345 ttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgca 404  Q
    |||||||||||| | ||||||||||| | |||||||||   |||||||||||||||||||    
T  10621383 ttaaaggtgaaaaaatggggtgtccggggttcaaaccctgacccctgcatacataatgca 10621442  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 401
Target Start/End: Complemental strand, 30660054 - 30659984
Alignment:
Q  331 tggagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataat 401  Q
    |||| |||||||  |||||||||||||||||||||||||| | ||  |||||   ||||||||||||||||    
T  30660054 tggaaaaatttaccttaaaggtgaaatagtggggtgtccggggtttgaaccccgacccctgcatacataat 30659984  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 404
Target Start/End: Original strand, 44662457 - 44662530
Alignment:
Q  331 tggagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgca 404  Q
    |||||||||| |  |||||||||||||||||||||||||| | ||| |||||  ||||||||||||||||||||    
T  44662457 tggagaaattcaccttaaaggtgaaatagtggggtgtccggggttcgaaccccggcccctgcatacataatgca 44662530  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 331 - 401
Target Start/End: Complemental strand, 46196019 - 46195949
Alignment:
Q  331 tggagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataat 401  Q
    |||||||||| |  |||||||||||||||||||||||||| | |||||||||   ||||||||||||||||    
T  46196019 tggagaaattcaccttaaaggtgaaatagtggggtgtccggggttcaaaccccgacccctgcatacataat 46195949  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 404
Target Start/End: Original strand, 6548707 - 6548778
Alignment:
Q  332 ggagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgca 404  Q
    ||||||||| |  ||||||||||||||||||||||||||   ||| |||||  | ||||||||||||||||||    
T  6548707 ggagaaattcaccttaaaggtgaaatagtggggtgtccggagttcgaaccc-cggccctgcatacataatgca 6548778  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 404
Target Start/End: Complemental strand, 24202251 - 24202178
Alignment:
Q  331 tggagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgca 404  Q
    |||||||||| |  |||||||||||||||||||||||||| | ||| |||||  ||||||||||||||||||||    
T  24202251 tggagaaattcaccttaaaggtgaaatagtggggtgtccggggttcgaaccccggcccctgcatacataatgca 24202178  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 372
Target Start/End: Original strand, 38790090 - 38790130
Alignment:
Q  332 ggagaaatttattttaaaggtgaaatagtggggtgtccgag 372  Q
    ||||||||| || ||||||||||||||||||||||||||||    
T  38790090 ggagaaattcatcttaaaggtgaaatagtggggtgtccgag 38790130  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 40473543 - 40473580
Alignment:
Q  358 agtggggtgtccgagattcaaacccaagcccctgcata 395  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  40473543 agtggggtgtccgaggttcaaaccccagcccctgcata 40473580  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 395
Target Start/End: Complemental strand, 7234054 - 7234002
Alignment:
Q  343 ttttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcata 395  Q
    |||| ||||||||  ||||||||||||||| ||||||||| ||||||||||||    
T  7234054 ttttcaaggtgaataagtggggtgtccgaggttcaaaccccagcccctgcata 7234002  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 404
Target Start/End: Complemental strand, 9489576 - 9489505
Alignment:
Q  333 gagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgca 404  Q
    |||||||| || |||||||||||||||| |||| |||  | ||| |||||  ||||||||||||||||||||    
T  9489576 gagaaattcatcttaaaggtgaaatagtagggtatccagggttcgaaccccggcccctgcatacataatgca 9489505  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 395
Target Start/End: Complemental strand, 27394594 - 27394544
Alignment:
Q  345 ttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcata 395  Q
    |||||||||||  ||||||||||||| | ||||||||| ||||||||||||    
T  27394594 ttaaaggtgaataagtggggtgtccggggttcaaaccccagcccctgcata 27394544  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 395
Target Start/End: Complemental strand, 40160824 - 40160772
Alignment:
Q  343 ttttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcata 395  Q
    |||||||||||||  ||||||||||||| | ||||||||| |||||| |||||    
T  40160824 ttttaaaggtgaataagtggggtgtccggggttcaaaccccagccccggcata 40160772  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 404
Target Start/End: Complemental strand, 32660914 - 32660858
Alignment:
Q  348 aaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgca 404  Q
    ||||||||| ||||||||||||| | ||  ||||| |||||||||||| ||||||||    
T  32660914 aaggtgaaaaagtggggtgtccggggtttgaaccccagcccctgcatatataatgca 32660858  T

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