View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16967_high_11 (Length: 422)
Name: NF16967_high_11
Description: NF16967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16967_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 180 - 413
Target Start/End: Complemental strand, 11333469 - 11333230
Alignment:
| Q |
180 |
ttgattcacagtgagtttgacaaaatcacagtatcattgtgatccgatcggctttgaagttgacaaaattatcgtaattttatcaaatttcaagccgaca |
279 |
Q |
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| T |
11333469 |
ttgattcgcaatgagtttgacaaaatcacagtatcatcgtgatccgatcggctttgaagttgacaaaattttcgtaattttatcaaatttcaagccgaca |
11333370 |
T |
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| Q |
280 |
aatttcannnnnnnccaactaatttagtggctcacatagcctaattg------cgtggaaaattcgaagttcgaatttcagcctctgcatattattatcc |
373 |
Q |
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| T |
11333369 |
aatttcatttttttccaactaatttagtggctcacataccctaattgtggagaagtggaaaattcgaagctcgaatttcaacctctgcatattattatcc |
11333270 |
T |
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| Q |
374 |
atgtagctataattcttcatgatttaagccaaattcttct |
413 |
Q |
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| T |
11333269 |
atgtagctataattcttcatgatttaagccaaattcttct |
11333230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 11333595 - 11333407
Alignment:
| Q |
1 |
tttatgttgatggttgtgatgatgctcctcagactgttcctgatttgttcaatggtggaatccttcccaatgtaattttactaatttttatttcaatttt |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11333595 |
tttatgttgatggttgtgatgaggctcctcagactgttcctgatttgttcaatggtggaatccttcccaatgtaattttactaatttttatttcaatttt |
11333496 |
T |
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| Q |
101 |
aagatttgtttcatacatataaatatttgattcgcaatgattttgacaaaatcacagtatc------atccgatcggctttgaagttga |
183 |
Q |
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| T |
11333495 |
tagatttggttcatacatatacatatttgattcgcaatgagtttgacaaaatcacagtatcatcgtgatccgatcggctttgaagttga |
11333407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 25669030 - 25669058
Alignment:
| Q |
183 |
attcacagtgagtttgacaaaatcacagt |
211 |
Q |
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| T |
25669030 |
attcacagtgagtttgacaaaatcacagt |
25669058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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