View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16967_high_12 (Length: 378)
Name: NF16967_high_12
Description: NF16967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16967_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 163 - 362
Target Start/End: Complemental strand, 278915 - 278716
Alignment:
| Q |
163 |
ctatgagaaactaagtgttgttattccacaaaagacttactcttgcatagaggctctgtggatcagtagcaggacctctactagatcttgattttccact |
262 |
Q |
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| T |
278915 |
ctatgagaaactaagtgttgttattccacaaaagacttactcttgcatagaggctctgtggatcagtagcaggacctctactagatcttgattttccact |
278816 |
T |
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| Q |
263 |
taatttagctgtagaatcattctggctcaaactagaagattcccttccacgtggctcatgagaagaattggactcatcctctgaacaatgaccgcttaag |
362 |
Q |
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| T |
278815 |
taatttagctgcagaatcattcaggctcaaactagaagattcccttccacgtggctcatgagaagaattggactcatcctctgaacaataaccgcttaag |
278716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 278956 - 278913
Alignment:
| Q |
21 |
gggtaatagactaatagtgcatatcttttaagacttaaggacta |
64 |
Q |
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| T |
278956 |
gggtaatagactaatagtgcatatcttttaagacttaaggacta |
278913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 4249286 - 4249350
Alignment:
| Q |
76 |
actaacataaaggatcaatttgacactagaaaactagaaggattagttcgatacaaacattaaac |
140 |
Q |
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| T |
4249286 |
actaacataaaggaccaatttaaaactaaaaaactaaaaggattaatctgatacaaactttaaac |
4249350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 186 - 350
Target Start/End: Original strand, 24653261 - 24653428
Alignment:
| Q |
186 |
ttccacaaaagacttactcttgcatagaggctctgtggatcagtagcaggacctctactagatcttgattttccacttaatt---tagctgtagaatcat |
282 |
Q |
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| T |
24653261 |
ttccaaaaaggacttactcttgtatagaggctctgtggatcagcagagggaccactactagatcttgatttgccacttaagttcatagctgtagaaattt |
24653360 |
T |
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| Q |
283 |
tctggctcaaactagaagattcccttccacgtggctcatgagaagaattggactcatcctctgaacaa |
350 |
Q |
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| T |
24653361 |
tctggctcaaacttgaaaatgccgctacacgatgctcttgaaaagaattggattcattatctgaacaa |
24653428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 201 - 302
Target Start/End: Original strand, 24685030 - 24685134
Alignment:
| Q |
201 |
actcttgcatagaggctctgtggatcagtagcaggacctctactagatcttgattttccacttaattt---agctgtagaatcattctggctcaaactag |
297 |
Q |
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| T |
24685030 |
actcttgaatagagactatctggatcagtagcaggacctctactagatattgattggccgcttaacttcagagctgtagaattgttctgactcaaacttg |
24685129 |
T |
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| Q |
298 |
aagat |
302 |
Q |
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||||| |
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| T |
24685130 |
aagat |
24685134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 268
Target Start/End: Original strand, 24718843 - 24718923
Alignment:
| Q |
186 |
ttccacaaaagacttactcttgcatagaggctctgtggatcagtagcaggacctctactagatcttgattttccacttaattt |
268 |
Q |
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| T |
24718843 |
ttccaaaaaggacttactcttgcatggacgctctgtggaacagtagtaggacctc--ctagatattgatttgccatttaattt |
24718923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 244
Target Start/End: Original strand, 41806017 - 41806087
Alignment:
| Q |
174 |
taagtgttgttattccacaaaagacttactcttgcatagaggctctgtggatcagtagcaggacctctact |
244 |
Q |
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| T |
41806017 |
taagtcttcttattccataaaggacttgctcttgtatagaggctctggggatcagtagcaggacctctact |
41806087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 282 - 347
Target Start/End: Original strand, 41799894 - 41799959
Alignment:
| Q |
282 |
ttctggctcaaactagaagattcccttccacgtggctcatgagaagaattggactcatcctctgaa |
347 |
Q |
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| T |
41799894 |
ttctggttcaaacttgaagattctcttccacgtacctcatgagaagaattggactcatactctgaa |
41799959 |
T |
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