View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16967_high_13 (Length: 378)
Name: NF16967_high_13
Description: NF16967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16967_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 38123085 - 38123445
Alignment:
| Q |
1 |
atataatgatgaattctaaacnnnnnnncctaactaaagaatatgatggcactttatataatccctaaattacccaagaacatagatatcagcaggtgga |
100 |
Q |
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| T |
38123085 |
atataatgatgaattctaaactttttttcctaactaaagaatatgatggcactttatataatccctaaattacccaagaacatagatatcagcatgtgga |
38123184 |
T |
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| Q |
101 |
gaaatgtgaagccaatcttccagacttaaataacttggaggtgatttcccagccacgttccaagtggcaacgaatattctgtattcaaaaggaaaaataa |
200 |
Q |
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| T |
38123185 |
gaaatgtgaagccaatcttccagacttaaataacttggaggtgatttcccggccacgttccaagtggcaacgaatattctgtattcaaaaggaaaaataa |
38123284 |
T |
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| Q |
201 |
ataaatcaagagaataaaattcttaaatttcattgtaatggcaacaaacatgataattaagtacatgaagcatacctataattacatacatctgtaacct |
300 |
Q |
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| T |
38123285 |
ataaatcaagagaataaaattcttaaatttcactgcaatggcaacaaacatgataattaagtacatgaagcatacctataattacatacatctgtaacct |
38123384 |
T |
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| Q |
301 |
gagcttcaccaaggtaactcttacctctttgcattctatctatgtacgttctgcttgatct |
361 |
Q |
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| T |
38123385 |
gagcttcaccaaggtaactcttacctctttgcattctatctatgtacgttctgcttgatct |
38123445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 31829411 - 31829340
Alignment:
| Q |
70 |
ttacccaagaacatagatatcagcaggtggagaaatgtgaagccaatcttccagacttaaataacttggagg |
141 |
Q |
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|||||| |||||||| ||||||||||| ||||| | |||||||||||||||||| |||||||||| ||||| |
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| T |
31829411 |
ttaccctagaacataaatatcagcaggaggagatgtatgaagccaatcttccagatttaaataactcggagg |
31829340 |
T |
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