View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16967_high_14 (Length: 377)
Name: NF16967_high_14
Description: NF16967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16967_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 72 - 349
Target Start/End: Complemental strand, 51856581 - 51856304
Alignment:
| Q |
72 |
tttaatcaatctcgtttgaagggtaacaagccactcttatattgctgnnnnnnnagacgaaaattagagatgaaaatcagtctcaaagttcaatgtaatg |
171 |
Q |
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| T |
51856581 |
tttaatcgatctagtttgaagggtaacaagccactcttatattgctgtttttttagacgaaaattagagatgaaaatcagtctcaaagttcaatgtaatg |
51856482 |
T |
|
| Q |
172 |
ttaactattactgttattttggacgcaatattcttgacaatttattgcaacaataggtcaaaggcattacagaaaaataaaatcaatttaactaaaagta |
271 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51856481 |
ttaactattactgttattttgtaagcaatattcttgacaatttattgcaacaataggtcaaaggcattacagaaaaataaaatcaatttaactaaaagta |
51856382 |
T |
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| Q |
272 |
gcaacattattatacataataagaattctttttatgacattctctacctattttcccttttgacaatgtagatactta |
349 |
Q |
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| T |
51856381 |
gcaacattattatacataataagaattctttttatgacattctctacctattttcccttttgacaatgtagatactta |
51856304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 51856679 - 51856591
Alignment:
| Q |
1 |
gttgttgattattaaacagggaacttaataataagacatgattct-gtgaaattggtcctgcaatgtgtgactttaatcaatctcgttt |
88 |
Q |
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| T |
51856679 |
gttgttgattattaaacagggaacataataataagacatgattctagtgaaattggtcctgcaatgtgtgactttaatcaatctcgttt |
51856591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Complemental strand, 51856710 - 51856680
Alignment:
| Q |
85 |
gtttgaagggtaacaagccactcttatattg |
115 |
Q |
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| T |
51856710 |
gtttgaagggtaacaagccactcttatattg |
51856680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 85 - 349
Target Start/End: Complemental strand, 8945754 - 8945490
Alignment:
| Q |
85 |
gtttgaagggtaacaagccactcttatattgctgnnnnnnnagacgaaaattagagatgaaaatcagtctcaaagttcaatgtaatgttaactattactg |
184 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8945754 |
gtttgaagggtaacaagccactcttatattgctgtttttttagacgaaaattatagatgaaaatcagtctcaaagttcaatgtaatgttaactattactg |
8945655 |
T |
|
| Q |
185 |
ttattttggacgcaatattcttgacaatttattgcaacaataggtcaaaggcattacagaaaaataaaatcaatttaactaaaagtagcaacattattat |
284 |
Q |
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| T |
8945654 |
ttattttgtaagcaatattcttgacaatttattgcaacaataggtcaaaggcattacagaaaaataaaatcaatttaactaaaagtagcaacattattat |
8945555 |
T |
|
| Q |
285 |
acataataagaattctttttatgacattctctacctattttcccttttgacaatgtagatactta |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8945554 |
acataataagaattctttttatgacattctctacctattttcccttttgacaatgtagatactta |
8945490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 138 - 254
Target Start/End: Original strand, 128421 - 128536
Alignment:
| Q |
138 |
gagatgaaaatcagtctcaaagttcaatgtaatgttaactattactgttattttggacgcaatattcttgacaatttattgcaacaataggtcaaaggca |
237 |
Q |
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||||||||||| ||||||||||||||||||| | ||||||||||||||| ||||| | |||||| |||| |||||||||||||||||||||||||||| | |
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| T |
128421 |
gagatgaaaattagtctcaaagttcaatgtattattaactattactgttcttttgta-gcaatactcttaacaatttattgcaacaataggtcaaaggta |
128519 |
T |
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| Q |
238 |
ttacagaaaaataaaat |
254 |
Q |
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||||||||||| ||||| |
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| T |
128520 |
ttacagaaaaaaaaaat |
128536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 45480376 - 45480436
Alignment:
| Q |
29 |
taataagacatgattct-gtgaaattggtcctgcaatgtgtgactttaatcaatctcgttt |
88 |
Q |
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||||||| |||||||| || |||||||| |||||| |||||||||||||||||||||||| |
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| T |
45480376 |
taataagttatgattctagtcaaattggtactgcaacgtgtgactttaatcaatctcgttt |
45480436 |
T |
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